Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq886 123 3e-23 seq2440 95.1 1e-14 seq2556 82.4 8e-11 >seq886 Length=61200 Score = 123 bits (136), Expect = 3e-23 Identities = 280/416 (67%), Gaps = 9/416 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | || || | || || || |||| | ||||||||| | |||||||||| Sbjct 12485 CCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCCACGCTTC 12426 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||||||||||| |||||| ||| |||||| |||||||| ||| |||||| Sbjct 12425 TTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGCAGCAAAG 12366 Query 74889 GCGACAAGGCGTTGCGCGAA---CG-GTGCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 || || || || | |||| || |||| || | | ||||| | ||||||| || Sbjct 12365 GCTACGAGACGCTCGCCGAAAACCGAGTGC-TCATCACTGATCCAGCGCAGAGCCCACTC 12307 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || || || |||| ||| | || ||||| || | || ||| | || | Sbjct 12306 GGCCTTGCGCTTGATGCAAGGAATGGTCTCGATAGCATCAAAAAGGAAATCACGTTCGAC 12247 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 || || |||| | |||| || | ||| ||||| ||||| || ||||| ||| | Sbjct 12246 AGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCAGAGTGAATGTTCTCCAT 12187 Query 75065 GAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA--A 75122 | |||| || ||||||| | || ||||| || | |||||| || || || || Sbjct 12186 CATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACCTGTACTTCGTTCGAGAAGCG 12127 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 ||| | | |||||| | || ||||| || |||||||| || || || || || Sbjct 12126 TTC--GAGAAGATTCTCGTTAACAATGCCATCAGAGGCGGCAAAGAACGCGAGGAC 12073 >seq2440 Length=22844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | || || | |||||| ||||||||||| ||||||||||| || | ||| Sbjct 14509 CCCTCATCACGACTGATGAGTTCATTTGAAAACGAAAGACCAGGCATAAGCCCCCTTTTC 14450 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| || || |||| | ||| |||| || || ||| ||||| Sbjct 14449 TTCAACCAGAAGATTGCGGCAAATGAACTAGAGAAAAAGAGTCCCTCAACAGCTGCAAAT 14390 Query 74889 GCGACAAGGCGTTGCGCGAACG 74910 ||||| || |||| ||| |||| Sbjct 14389 GCGACGAGCCGTTCCGCAAACG 14368 >seq2556 Length=115598 Score = 82.4 bits (90), Expect = 8e-11 Identities = 284/439 (65%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||| ||| || | || || ||| | | ||||||||||| || || |||||| Sbjct 98507 CCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCGCGCTTC 98566 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || ||||| || |||| | ||| || ||| || ||||| || |||||| || || Sbjct 98567 TTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCAGCGAAT 98626 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTC 74944 || || | | | || || |||| ||| ||| ||||| | | ||||| || Sbjct 98627 GCCACCAATCTCTCTGC-AAAAGTGCTTCGTTTGTCAGATATCCATTTGAGGGCCCAGTC 98685 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 ||||| || |||| ||| || | || || || || | |||||| ||| | | Sbjct 98686 GGCTTTGCGCTTGA-TGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGCGTTGAT 98744 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 ||||||||||| | || || | || ||||| || || ||||||| || Sbjct 98745 TAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGTTTTCCA 98804 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| || | || || | |||||||| || || || || |||||||| Sbjct 98805 TCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTGAAAAGC 98864 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| || | ||||| ||||| |||||||| || || || || || Sbjct 98865 GCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGACATGGG 98924 Query 75184 TGATAAAGTGGCGCTCATC 75202 |||| || || ||||| || Sbjct 98925 TGATGAAATGACGCTCGTC 98943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195185271400