Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 196 5e-45 seq2933 183 3e-41 seq2786 158 1e-33 seq275 107 2e-18 seq1368 102 9e-17 seq777 93.3 5e-14 seq2556 89.7 6e-13 >seq1 Length=474241 Score = 196 bits (216), Expect = 5e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | ||||| ||||| || || | ||||| ||||| Sbjct 254141 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTC 254200 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| ||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 254201 TGATACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 254260 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || |||||||| ||||| || || |||| || || || | || ||||| Sbjct 254261 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 254320 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||| ||||||||||| || | |||||||| ||||| Sbjct 254321 TATCCAAAAAGAATCGACTCTTCATCTTGTTCTCCGTCTTCGTGGTGG 254368 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| ||||| || ||||||||||| ||||| | Sbjct 254370 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 254429 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||| || || |||||||| ||||| Sbjct 254430 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 254489 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||||| |||||| || | |||||||| Sbjct 254490 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 254549 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || || |||||||| Sbjct 254550 ATTCAGAAAGAGTCTACCCTTCATCT 254575 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| || || ||||| | || ||||| || |||||||||||||||| ||| || Sbjct 254019 ATTCCTCCTGATCAACAGCGATTGATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACT 254078 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || | || |||||||| ||||| ||||| || | |||||||| ||| Sbjct 254079 CTTTCTGACTACAACATTCAGAAGGAATCTACTCTGCATCTTGTTCTTCGTCTTCGTGGT 254138 Query 27631 GGA 27633 ||| Sbjct 254139 GGA 254141 >seq2933 Length=244213 Score = 183 bits (202), Expect = 3e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| |||||||| ||||||||||| Sbjct 207832 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATTACTCTGGAGGTTGAGTCGTCG 207891 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 207892 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 207951 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| | ||||||| ||| || || | || || || Sbjct 207952 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 208011 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || |||||||| || Sbjct 208012 ATCCAGAAGGAGTCGACTCTTCACCT 208037 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || ||||||||||| ||||| | Sbjct 207604 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTCGAGTCGTCT 207663 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 207664 GACACTATTGACAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 207723 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| ||||| | ||||||| ||| || || | || || ||| Sbjct 207724 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 207783 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || || || ||| | |||||||| || || Sbjct 207784 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 207830 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || ||||| || || ||| | ||||| ||||| Sbjct 207376 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 207435 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || ||||| |||||||| |||||||| || || Sbjct 207436 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 207495 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| || ||||| ||||| ||||| |||| || ||||| | ||||| || Sbjct 207496 CAACGACTAATCTTCGCTGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 207555 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | ||||| || || || Sbjct 207556 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 207602 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||||||||| || ||||| ||||| ||||| |||||||| ||||| | || || Sbjct 206967 ATTCCTCCAGACCAACAACGTCTGATTTTCGCTGGAAAGCAACTTGAGGACGGACGAACT 207026 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || ||||||| || ||||| || || |||||| | |||||||| || Sbjct 207027 CTTTCGGATTACAACATCCAAAAAGAGTCCACCCTCCACCTAGTCCTTCGTCTTCGTGGC 207086 Query 27631 GG 27632 || Sbjct 207087 GG 207088 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| || || ||||| || ||||| || ||||| || ||||| ||||| |||| ||| | Sbjct 207251 GAATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGAA 207310 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 |||| | ||||| || | || ||||||||||| || || || ||| | ||||| || | Sbjct 207311 CCCTTTCCGACTACAACATTCAGAAGGAATCCACACTCCACCTTGTCCTTCGTCTCCGTG 207370 Query 27629 GTGG 27632 | || Sbjct 207371 GAGG 207374 >seq2786 Length=9315 Score = 158 bits (174), Expect = 1e-33 Identities = 159/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||| | |||||||| |||||||||| Sbjct 1735 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGGCGATTACTCTGGAGGTTGAGTTGTCG 1676 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| |||||||||||||| || || || |||||| Sbjct 1675 GACACCATTGACAATGTAAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 1616 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| | ||||||| ||| || | | || || ||| Sbjct 1615 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGC---CCGATTACAAT 1559 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| | |||||||| || Sbjct 1558 ATTCAGAAGGAGCCGACTCTTCACCT 1533 >seq275 Length=3656 Score = 107 bits (118), Expect = 2e-18 Identities = 108/138 (78%), Gaps = 7/138 (5%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG---TCA 27462 ||||| ||||| |||||||| || || || ||||| |||||||| |||||||| | | Sbjct 2709 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAACGTTGA 2650 Query 27463 G--GT--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 | || || | ||||| ||| | ||||| ||||| |||||||||||||| || || || Sbjct 2649 GTCGTCGGACACCATTGACAATGTAAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCC 2590 Query 27519 AGACCAGCAGCGTCTAAT 27536 |||||||||||||| || Sbjct 2589 TGACCAGCAGCGTCTCAT 2572 >seq1368 Length=51257 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| | ||||| || || ||||| |||||| | || || |||| ||| |||| || Sbjct 43057 CATGAAGGCATCAGCGAGACCTTGAACACCGATGCCAATGGGACGGTTACGCATGTTAGA 42998 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| |||||| ||||| ||||| |||| ||| |||||||| || |||||| || Sbjct 42997 TCGACGGGCCTCAGGAATGGGGTAGTAGTTGCGATCAATGACGCGATTGAGGTTGAAAGT 42938 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTC 80870 || | ||||||||||| |||||||| ||||| Sbjct 42937 GACCGTCTTCGTAACATCATGGAGTTTCTGGAAGTC 42902 >seq777 Length=200876 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/318 (67%), Gaps = 21/318 (7%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||||||| || || ||||| ||||| | || || |||| ||| |||| || Sbjct 115921 CATGAAGGCGTCAGCGAGACCTTGAACACCGATTCCAATGGGACGGTTACGCATGTTAGA 115862 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| |||||| || || ||||| |||| ||| |||||||| || |||||| | Sbjct 115861 TCGACGGGCCTCAGGGATGGGGTAGTAGTTGCGATCAATGACGCGATTGAGGTTGAAAG- 115803 Query 80835 AACAACCCGT---GTAACATCATGAAGTTTCTGAAA---GTCGAATTGGTTCC------- 80881 | ||| | ||||||||||| |||||||| || || |||| | || | Sbjct 115802 --CGACCGTTTTCGTAACATCATGGAGTTTCTGGAAATCGTAGAATGGTTTGCCAGATGC 115745 Query 80882 --CCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC 80936 ||||||| | | | ||||| ||||| || ||||| || || || || || Sbjct 115744 ATCCTTCACTATGTAGGTTGGAAGAGCAAGGGAAGCAAGATTACAGACAGCAGTTTCATC 115685 Query 80937 AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTT 80996 | | | | ||||| ||||| ||||| | ||| || || || || || ||||| Sbjct 115684 CGGAGAAGAGTATTCGACAATTTCAGTGCAAAGATTGGATGATTTGATGACTCCGAGGTT 115625 Query 80997 TTTCTGGTTTGACTTGGC 81014 || ||||| || ||||| Sbjct 115624 CTTTTGGTTAGATTTGGC 115607 >seq2556 Length=115598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || ||||| || ||||||||||| ||| ||| ||||||||| |||| ||||| || Sbjct 98617 TGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGAAGCGCGG 98558 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||| || || | | ||| |||||||| ||| Sbjct 98557 CCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATC 98521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570288706818160