Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 196 1e-44 seq2933 187 6e-42 seq2786 140 8e-28 seq275 89.7 1e-12 seq2578 86.0 1e-11 >seq1 Length=474241 Score = 196 bits (216), Expect = 1e-44 Identities = 177/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| |||||||| || ||||||||||| |||||||||| ||| || Sbjct 254363 ACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGT 254304 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || || |||||||| ||||||||||||||||| | || Sbjct 254303 GCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACC 254244 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| |||||| ||||| || || ||||| ||||| || ||||| | Sbjct 254243 CTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAA 254184 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| |||||||| || | |||||| ||||| | ||||||| Sbjct 254183 GGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 254141 Score = 168 bits (186), Expect = 2e-36 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||| ||||| || |||||||| || |||||||| || | ||| || | ||||| |||| Sbjct 254577 CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCA 254518 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||| || || ||||| | || |||||||| ||||||| ||||| |||||||| | Sbjct 254517 ACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAA 254458 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 ||||| || || || ||||| |||||||| || ||||| |||||||||||||||| Sbjct 254457 TCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTC 254398 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || | ||||| ||||| | |||||| Sbjct 254397 CGGTCAATGTCTTCACAAAGATCTGCAT 254370 >seq2933 Length=244213 Score = 187 bits (206), Expect = 6e-42 Identities = 174/221 (79%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||||||||| || || |||||||| || || || ||||| | ||| || Sbjct 207824 CGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTG 207765 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||| ||||||||| || || || || |||||||||||||| |||| ||| Sbjct 207764 CGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCT 207705 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||||||||| || || || || || || |||||||| || ||||| ||| Sbjct 207704 TCCTTGTCCTGGATTTTCGCCTTGACATTGTCAATAGTGTCAGACGACTCGACCTCAAGA 207645 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||||||||| ||||| || || | |||||| Sbjct 207644 GTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 207604 Score = 185 bits (204), Expect = 2e-41 Identities = 176/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||||||||| || ||||| || || ||||| || || | ||| Sbjct 207600 TCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAG 207541 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||| ||||||||||| |||||||| || |||||||| || ||||||| Sbjct 207540 GGTGCGTCCATCTTCGAGCTGCTTGCCAGCGAAGATTAGTCGTTGTTGATCGGGAGGAAT 207481 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| ||||| ||||| |||||||| ||||| ||||| || || ||||| Sbjct 207480 GCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTC 207421 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||||||| || |||||||| ||||| ||||| | ||||| Sbjct 207420 CAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 207376 Score = 172 bits (190), Expect = 1e-37 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 ||||||||||||| ||||| || |||||||| ||||| | ||| || | ||||| |||| Sbjct 208039 CAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCA 207980 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 ||||||||| || || || || || || |||||||| |||| || ||||||||||||| Sbjct 207979 ACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGA 207920 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| || || || || |||||||| || |||||||| ||||| |||||||| | Sbjct 207919 TCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTGC 207860 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || | |||||| Sbjct 207859 CTGTGAGGGTCTTGACGAAGATCTGCAT 207832 Score = 114 bits (126), Expect = 3e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || |||||||||||||||||||| ||||||| ||| || Sbjct 207083 ACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGAAAGAGT 207024 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | ||| || || || ||||| || ||||| || || ||||||||||| ||||||| Sbjct 207023 TCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAGACGTTGTTGGTCTGGAGGAA 206968 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||||||||| || ||||| || || || ||||| || || | ||| Sbjct 207372 TCCACGGAGACGAAGGACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAAAG 207313 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||| | |||||||| |||||||| || || || ||||| |||||||||||||| || Sbjct 207312 GGTTCGACCATCTTCGAGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTCAGGTGG 207256 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| || |||||||| || || || ||||| ||||||||| ||||||||| Sbjct 206908 CCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCGATAGTGTCAGAGGACTCAACCTCG 206849 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || ||||| |||||||| || | ||||| Sbjct 206848 AGAGTGATAGTCTTCCCAGTGAGGGTCTTTACGAAGATTTGCAT 206805 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| || ||||| || || ||||| || |||||||||| Sbjct 207193 CCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATCGTGTCCGACGATTCAACCTCG 207134 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || | ||||| || || | |||||| Sbjct 207133 AGGGTGATTGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCAT 207090 >seq2786 Length=9315 Score = 140 bits (154), Expect = 8e-28 Identities = 156/208 (75%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 ||||||||||||| | ||| || || || || ||||| | | || | ||||| |||| Sbjct 1531 CAAGGTGAAGAGTCGGCTCCTTCTGAATATTGTAATCGG---GCGTGCGACCATCCTCCA 1587 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 ||||||||| || || || || || || |||||||| || | || ||||||||||||| Sbjct 1588 ACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGA 1647 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 | || || || || || |||||||| || |||||||| ||||| |||| ||||| Sbjct 1648 TTTTCGCCTTTACATTGTCAATGGTGTCCGACAACTCAACCTCCAGAGTAATCGCCTTTC 1707 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || | |||||| Sbjct 1708 CTGTGAGGGTCTTGACGAAGATCTGCAT 1735 >seq275 Length=3656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 7/138 (5%) Strand=Plus/Plus Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || || || |||||||| || | || |||||||||||||| || || || || Sbjct 2572 ATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTTACATTG 2631 Query 211044 TCGATGGTGTCAGAG-------CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || |||||||| || | ||||||||| ||||| ||||||||||| ||||| || Sbjct 2632 TCAATGGTGTCCGACGACTCAACGTTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGT 2691 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | |||||| Sbjct 2692 CTTGACGAAGATCTGCAT 2709 >seq2578 Length=112811 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| ||||||||||| || || || ||||||||||| ||| || ||||| Sbjct 100615 CCTTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCC 100556 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| ||||| ||||| || ||||| ||||| | ||||| || || Sbjct 100555 AGGGTGATTGTCTTACCCGTTAGGGTCTTGACAAAAATTTGCATCTTGTG 100506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159106806474695