Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2933 120 2e-22 seq1 93.3 3e-14 >seq2933 Length=244213 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||||||||| ||||||||||| || || || || | Sbjct 207604 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTCGAGTCGTCT 207663 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | ||||| ||||| |||||| | ||||| || || Sbjct 207664 GACACTATTGACAATGTCAAGGC-GAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCA 207722 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| || |||| || | ||||| | |||||||| Sbjct 207723 ACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAA 207782 Query 23790 CATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 207783 TATTCAGAAAGAGTCAAC 207800 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || ||||| ||||| || ||||| || || Sbjct 207832 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATTACTCTGGAGGTTGAGTCGTCG 207891 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || || ||||| || || | ||||| || || Sbjct 207892 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 207951 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||| || | ||||| | |||||||||| Sbjct 207952 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 208011 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 208012 ATCCAGAAGGAGTCGAC 208028 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| ||||||||||| |||||||||||| | || || || || | Sbjct 207376 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 207435 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | || || |||||| Sbjct 207436 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 207495 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || |||| || || ||||| || || ||||| | |||||| | || |||||| Sbjct 207496 CAACGACTAATCTTCGCTGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 207555 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 207556 ATTCAGAAGGAGTCAAC 207572 >seq1 Length=474241 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || ||||| ||||||||||| || || || || | Sbjct 254370 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 254429 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | ||| ||| ||||||||||| | || || || || Sbjct 254430 GACACTATCGACAATGTCAAGGC-AAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCA 254488 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || || || |||| || | || || | || || || Sbjct 254489 ACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAA 254548 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 254549 CATTCAGAAAGAGTCTAC 254566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997064385844