Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1520 120 4e-22 seq2556 114 2e-20 seq1379 96.9 5e-15 seq777 93.3 6e-14 >seq1520 Length=48961 Score = 120 bits (132), Expect = 4e-22 Identities = 361/552 (65%), Gaps = 18/552 (3%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 |||||||| || || | |||||||| | || || | |||||| ||||| || | Sbjct 6190 CATGCAAAGTCGGTGTGCATTCCTTCATCACGGCTGATAAGTTCGTTTGAAAAGGTCAAC 6249 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || |||| || |||||||||||||| ||||||||| |||||||||||| || || || Sbjct 6250 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 6309 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC----TCCGTAACTGGCTTCGTTGTG 48316 || ||||| | ||| | ||||| |||| || ||||||| | |||| | Sbjct 6310 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAACGTAACTTG-ATCGTCTTC 6368 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | | ||||||| | || || | || | ||||| || ||||| |||| | | Sbjct 6369 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 6428 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATAC 48434 || | || | ||| | ||||| | || || | || | ||||| || Sbjct 6429 GAACAAGAATGATCGTTCGAAGGGATCTTGGATATACGTTTGAATCAGCAAAGA--GTAA 6486 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCAT---CTGAAATCCGTAAAAACATCTCGCTTCT 48491 |||| || || || ||||| || ||| ||| ||||| || || ||| || || Sbjct 6487 GTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTCA 6543 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || ||| | || || | || | ||| || || ||||| || || || Sbjct 6544 GCGACCTGAATTTCACTAGAGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGAC 6603 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTA 48608 ||||| |||||||||| ||| | | ||| | ||||| | ||| | || Sbjct 6604 GCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTTG 6663 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 |||||||| | | ||| ||||| | |||| |||||| | ||||| || || ||||| Sbjct 6664 TTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCGGTAGTCCAGAAGGAAGCCTCA 6723 Query 48669 GCTTTTTTATAC 48680 |||||||| ||| Sbjct 6724 GCTTTTTTGTAC 6735 Score = 89.7 bits (98), Expect = 7e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 47865 ACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAAT 47924 || || || || |||||||| ||||| ||||||| ||||| | ||||| |||||||| Sbjct 5861 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 5920 Query 47925 GGATTAACTG-CATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAAC 47983 || || ||| |||| || | ||| || || | | | || ||||| ||| |||| Sbjct 5921 GGGTTC-CTGACATTGTATAATTTGTTGTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 5979 Query 47984 GAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGC 48043 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||| | ||| Sbjct 5980 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 6039 Query 48044 CTC 48046 || Sbjct 6040 ATC 6042 >seq2556 Length=115598 Score = 114 bits (126), Expect = 2e-20 Identities = 367/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| ||| | ||||||||||| || || | ||||| ||| | || || Sbjct 98485 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 98544 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || || || || | ||| || || | ||||| || |||||||| || Sbjct 98545 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 98604 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG-TTGT--- 48315 || || || || || || ||||| | ||||||| | || | |||||| |||| Sbjct 98605 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 98663 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 |||||| | ||||| || || || ||| | || || ||||||||||| || | Sbjct 98664 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 98723 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 |||||| | || ||| ||| || ||||| ||||| || | ||| || Sbjct 98724 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 98783 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TG 48494 |||| || |||| ||||| || || || || || ||||| | | ||| || | || Sbjct 98784 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 98843 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || || || | |||| || || || ||| || || || || || ||| || Sbjct 98844 CT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 98902 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTCGTTG-GAAGTCAGTTTATT 48610 ||||| ||||| | ||||| | || |||| | || ||| | || | | || Sbjct 98903 GCAAAGAATGCAAGGACATGGGTGATGAAATGACGCTCGTCATTGTTTAATC-GCTCGTT 98961 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | ||| | | | || | ||||| | ||||| || ||||| ||||| Sbjct 98962 CCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGC 99021 Query 48671 TTTTTTATACATATTCCATA 48690 ||| || ||||| | ||||| Sbjct 99022 TTTCTTGTACATCTGCCATA 99041 >seq1379 Length=51093 Score = 96.9 bits (106), Expect = 5e-15 Identities = 167/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 78011 CATA-AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| || | ||| || ||||||||||| ||||| || || |||| ||||||| | Sbjct 1917 CATACAACAAATCTGGAATCCATAGAGCGTAAAATAAGTCGCGTGTTCGCAGTTCTTCCT 1858 Query 78070 TTCC-TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 | || || | | | ||| | || | | | | || || | |||||| ||||| | Sbjct 1857 TCCCGTGGACTTTGCGCAAGCT-GATGATCGCGAAGATGTCTGCATGCCACGGTTCAACG 1799 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | | |||| || |||||||| ||||| ||||| | ||||| | || | Sbjct 1798 TAGATGGCTAAAGCTCCGGGACGTTTATTGCCTCCTTGATCAACGTATCTTGACGTAGCA 1739 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 ||||||||| | ||| |||| |||||||||||| || || ||||||| |||||| Sbjct 1738 TTATAAACTTGAAGCATCGGAACAATACCGTTAGAGTACCCGTTCGTTCCAGCAATATA 1680 >seq777 Length=200876 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || |||||||||||| |||| ||| |||| | ||| || || || Sbjct 115281 AAGAGATCCGGAATCCATAGAGCATAGAATAAATCACGGGCGCGCACTTCCTCTTTGCCA 115222 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| | | ||||| | | | | ||||||| |||||| ||||| ||||| || Sbjct 115221 TGATTCTTCCTCAAATCGATCATCGCGAAGATATCAGCATGCCAAGGTTCGAGATAGATA 115162 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | ||||| || || ||||| || || || | ||||| || || ||| || Sbjct 115161 GCGAAAGCCCCAGGACGCTTGTTACCACCTTGGTCGACATATCGTGCAGTAGCATTGTAC 115102 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 | | | |||||| | |||||| || || ||||| || || | ||| ||| Sbjct 115101 GCCCGAAGCATTGGCACAATACCATTCGAGTACCCATTCGTGCCGGCAATGTAA 115048 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||||||||||| || ||| |||||||| | | |||||||| |||||||| | Sbjct 116684 GTAAACTGAATTGCTTGAGCTGCAGGTTTTGTCCTCAAGTAGTACATGCCAGTTTTCAAT 116625 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGA---ATAACTAGGATCGGCT 76898 ||| |||| ||||||||||||||||| |||| || || || | | || ||| Sbjct 116624 CCCTTCTTCCACCCGTAGAAATGCATGCTCGTCAATT--GACCCAT-AGTTGGCGAGGCG 116568 Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 | ||||| ||||| ||||||||| |||||| || || | ||||| || Sbjct 116567 AGATGAACATTCAAACTCTGACTTTGGCAGATGAACGCGCCACGGTCAGCAGC 116515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642376535520