Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002000105.1_202017-02-13] 3,043 sequences; 40,928,581 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 174 3e-38 seq2933 172 1e-37 seq2786 122 2e-22 seq886 107 4e-18 seq2578 89.7 1e-12 seq275 89.7 1e-12 >seq1 Length=474241 Score = 174 bits (192), Expect = 3e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||| ||||||| |||||| || |||||||| | || || || |||||| Sbjct 254560 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 254501 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| |||||||| ||||| || || ||||| || |||||||| || || | Sbjct 254500 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTG 254441 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||||| || |||||||||||||| || ||||| ||||| || Sbjct 254440 TCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAATGTCTTCACA 254381 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 254380 AAGATCTGCAT 254370 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| | || |||||||||||| || || || | | Sbjct 254368 CCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAA 254309 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| ||||| || || || |||||||| | ||||||||||||| || Sbjct 254308 AGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGG 254249 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || |||||||| || || | || || || || || | || || Sbjct 254248 ATACCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACC 254189 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||| ||||| || ||||||||||| || || ||||||||| Sbjct 254188 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 254141 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | || ||| || || ||||||||||||| | Sbjct 254140 CCACCACGAAGACGAAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 254081 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| ||||| || |||||||||||||| || ||||| ||| ||| Sbjct 254080 AGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGA 254021 Query 282993 AT 282994 || Sbjct 254020 AT 254019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || ||||||||||||||||| ||||| || | || |||||||| |||| ||| || || Sbjct 253956 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACCTCA 253897 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| || || | ||| || |||||||| ||||| Sbjct 253896 AGGGTAATAGTCTTCCCAGTAAGAGTTTTGACGAATATTTGCAT 253853 >seq2933 Length=244213 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| || || || | || ||||| || || ||||| |||| Sbjct 207831 ACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGA 207772 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| |||||||| | || || || ||||| || | ||||||||||||| ||| Sbjct 207771 AAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGG 207712 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||| || || || || | || |||||||| || | ||||| Sbjct 207711 AATACCTTCCTTGTCCTGGATTTTCGCCTTGACATTGTCAATAGTGTCAGACGACTCGAC 207652 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 207651 CTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 207604 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||||||||| |||||||| | || || || ||||| Sbjct 208022 TCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 207963 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || |||||| |||||| ||||||||||| |||||||| || ||||| | Sbjct 207962 ATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATTG 207903 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||| | || || || ||||| |||||||| || || | ||||| ||| Sbjct 207902 TCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTGCCTGTGAGGGTCTTGACG 207843 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 207842 AAGATCTGCAT 207832 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | || || || || ||||||||||||| | Sbjct 207602 CCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAA 207543 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || || ||||| | |||||||| || ||| Sbjct 207542 AGGGTGCGTCCATCTTCGAGCTGCTTGCCAGCGAAGATTAGTCGTTGTTGATCGGGAGGA 207483 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 207482 ATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACC 207423 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || ||||| | |||||||| || || ||||| Sbjct 207422 TCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 207376 Score = 104 bits (114), Expect = 5e-17 Identities = 88/107 (82%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| ||||||| |||||||| || || ||| | || || |||||||| | ||| || Sbjct 207196 TACCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATCGTGTCCGACGATTCAACC 207137 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 207136 TCGAGGGTGATTGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCAT 207090 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | ||| ||||||||||||||||| || | Sbjct 207089 ACCGCCACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGA 207030 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| || || || ||||| ||||| || || || || |||| |||||||||||| Sbjct 207029 AAGAGTTCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAGACGTTGTTGGTC 206976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| |||| ||||||||||| || || || | ||||||||||| || | || || Sbjct 206911 TACCCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCGATAGTGTCAGAGGACTCAACC 206852 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 206851 TCGAGAGTGATAGTCTTCCCAGTGAGGGTCTTTACGAAGATTTGCAT 206805 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | ||| ||| || || ||||||||||| | | Sbjct 207374 CCTCCACGGAGACGAAGGACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAA 207315 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || || || ||||| || || || ||||| ||||| || | ||||||||||||| Sbjct 207314 AGGGTTCGACCATCTTCGAGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTCA 207261 >seq2786 Length=9315 Score = 122 bits (134), Expect = 2e-22 Identities = 142/191 (74%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || ||||| || | ||||||| |||||||| | || || || ||||| Sbjct 1548 TCCTTCTGAATATTGTAATCGG---GCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 1604 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || |||||| ||| |||||||||||||| ||||| || || ||||| | Sbjct 1605 ATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTTACATTG 1664 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||| || || || ||||| |||| ||| || || | ||||| ||| Sbjct 1665 TCAATGGTGTCCGACAACTCAACCTCCAGAGTAATCGCCTTTCCTGTGAGGGTCTTGACG 1724 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 1725 AAGATCTGCAT 1735 >seq886 Length=61200 Score = 107 bits (118), Expect = 4e-18 Identities = 132/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 ||||| ||||| || | ||| | ||||||||||| || || || ||||| | || Sbjct 12675 ATCGGTATGAACGCAACATTGATGTGTCAATATATCGAGTTTGTTGCCGATCGACTACTC 12734 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 || || || || || |||| |||| ||||| | ||||||||||| |||||||| | Sbjct 12735 GTCGCTCTCGGCAACAAGAAGTTGTACAACTCGACGAACCCCTTCGACTTTATGGACATG 12794 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 || || ||||| ||||| || ||||| || || ||||| || |||||| |||||||| Sbjct 12795 ATCTCGCTCCAAGGGAAGACAAACTTTTTTGAGAAGCGGGTGTCCGATTACTCAAAGGC 12853 >seq2578 Length=112811 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 |||||||||| || | ||| ||| || || ||||| ||||| | ||| || || ||| Sbjct 100788 CGAAGTACCAAGTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCCA 100729 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATAC 282996 || || ||||| || ||||| ||||||||||||||||| ||| ||||||| Sbjct 100728 TCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGGGGAATAC 100677 >seq275 Length=3656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 7/133 (5%) Strand=Plus/Plus Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||| || |||||| ||| |||||||||||||| ||||| || || ||||| | || || Sbjct 2577 ACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTTACATTGTCAAT 2636 Query 283034 AGTGTCCG-------AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 ||||||| || ||| || || ||||| |||||||| || || | ||||| | Sbjct 2637 GGTGTCCGACGACTCAACGTTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGA 2696 Query 283087 CGAATATCTGCAT 283099 |||| |||||||| Sbjct 2697 CGAAGATCTGCAT 2709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046698389274122