Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq482 172 6e-38 seq35 150 2e-31 seq109 111 2e-19 >seq482 Length=177074 Score = 172 bits (190), Expect = 6e-38 Identities = 299/432 (69%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| ||||||||| |||||| || || |||| |||||| || ||||| ||| | || Sbjct 124114 AGACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTT 124173 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||||||||| || || | ||||||||||||||||| Sbjct 124174 AGGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAA 124233 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC-TTTGTT 17139 || || |||||||| | || || || | |||| || || | || || || ||||| Sbjct 124234 AAGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTC 124292 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||||| | |||| |||||||| |||| ||||| || |||||||| || Sbjct 124293 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 124352 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | | | || | || || | | || |||||||| || || ||| Sbjct 124353 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 124412 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||| || || | ||| ||||| ||| || || || |||||| | || || || || Sbjct 124413 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 124472 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | ||| ||||| | || || ||| ||||||||||||||||| ||||| || Sbjct 124473 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 124532 Query 17380 GGCGAAAAACGC 17391 ||| || || || Sbjct 124533 GGCAAAGAATGC 124544 >seq35 Length=211330 Score = 150 bits (166), Expect = 2e-31 Identities = 375/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||| ||| | ||||| || | ||||| || ||||| || || | | Sbjct 160119 AGGCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCC 160060 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || || ||||| ||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 160059 AAGCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAG 160000 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | | || ||| || | || || || || | Sbjct 159999 AAAATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCA 159940 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | ||||| | | |||||||||| || |||| |||||| || || || || || Sbjct 159939 CTGATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCA 159880 Query 17201 TTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | ||| | | || | || | | |||| | || || || |||||||| || || Sbjct 159879 TCAAAAAGGAAATCACGTTCGACAG--GGTCTTTGATGTATGTGTCGATGAGAAGAGAGT 159822 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 | | |||||||| ||||||||||| ||||| || ||||| ||||| || || || | Sbjct 159821 AAGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGCGCCTCAG 159762 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | | || ||||| |||| ||||| ||||| ||||| || ||||| || | Sbjct 159761 CGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGG 159702 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCG- 17436 |||| || ||||| | | | | ||||| | |||| || ||| | | ||| Sbjct 159701 CGGCAAAGAACGCGAGGACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGG 159646 Query 17437 -----CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 |||||| | | ||||| |||| ||||| ||||| | ||||| ||| ||| Sbjct 159645 TTGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCC 159586 Query 17492 ACTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 159585 TCGGCCTTCTTGTACATTTGCCATAT 159560 >seq109 Length=35798 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 10/366 (3%) Strand=Plus/Plus Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 || ||||| || || ||| ||| | ||| || || | ||| || ||||| || |||||| Sbjct 2875 ATAAGACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAAT 2934 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || |||||| |||||||||||| | ||||||||| ||| |||||| |||| Sbjct 2935 GTCAAACCCGGCATCAATCCTCGTTTCTTCATCCAAAATATGCAGGCAAACGACGCAGAG 2994 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 || || || || |||| | |||||| || | || || || || | || | ||| Sbjct 2995 AAAAAAATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGT---GAATTTA 3051 Query 17138 TTA---CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||| ||||||| | || |||| | |||||| || ||||| || ||||| Sbjct 3052 TTATCTTGAATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCA 3111 Query 17195 ATGGCCTTAAATAATTTC--TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 || | || ||||| || | | | || | |||| ||||| || | || || | Sbjct 3112 ATAGAGTTGAATAACATCGAACGCTCTGGTGCATTTCGA--ATATATGTTTGAATAAGCA 3169 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 ||| |||| || || || |||||||| ||||| || || || || || || | Sbjct 3170 AAGAGTAGGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCG 3229 Query 17313 CTTCCG 17318 | |||| Sbjct 3230 CCTCCG 3235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532978356680