Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02]
1,951 sequences; 39,922,873 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq250 111 1e-19
seq1072 109 5e-19
seq31 87.8 2e-12
>seq250
Length=164446
Score = 111 bits (122), Expect = 1e-19
Identities = 152/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587
||||||| || | ||||||||||| |||||||| || || | || || |||||
Sbjct 133923 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 133864
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
| | ||| |||||||| |||| | |||||| || |||||||| ||||| || |||||
Sbjct 133863 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 133804
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707
||| ||| || || | |||| ||||| | ||||||||| | || | ||| |
Sbjct 133803 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCT 133744
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| ||||||| || || ||||| ||||||||
Sbjct 133743 TTCCGGTCAATGTCTTCACAAAGATCTGCAT 133713
>seq1072
Length=303801
Score = 109 bits (120), Expect = 5e-19
Identities = 147/202 (73%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| || | ||||| ||| |||||||| || ||
Sbjct 211292 GTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCG 211351
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660
||| |||| || || || ||||||||||| ||||||||||| | |||| || || ||
Sbjct 211352 GCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGT-ATCTTGGCCTT 211410
Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720
|| | |||| ||||| | ||||||||| | || | ||||||||| || || ||
Sbjct 211411 CACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGGT 211470
Query 118721 TTTTACAAAAATCTGCATGGCT 118742
|| ||||| || |||||| ||
Sbjct 211471 CTTAACAAAGATTTGCATGCCT 211492
Score = 102 bits (112), Expect = 7e-17
Identities = 150/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587
||||||| || | || ||||| || || |||||||||||| | ||||| |||||
Sbjct 210822 CACCAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCT 210881
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
| | ||| || ||||| | |||||||||||||| || || || ||||||||||||||
Sbjct 210882 CCAACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCT 210941
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707
|| || || || | || | |||||||| ||| ||||| | || | ||| |
Sbjct 210942 GGATCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCT 211001
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || || || || || || || ||||||||
Sbjct 211002 TTCCTGTGAGGGTCTTGACGAAGATCTGCAT 211032
>seq31
Length=238504
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||| ||||| | || || ||||| |||||||||||||| |||| ||| || |||
Sbjct 176096 CAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCCATC 176037
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633
||| || |||||||| ||| | ||||| ||||| ||||| || || ||
Sbjct 176036 CTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGGGGGAAT 175989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433820084462092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |