Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq109 116 3e-21 >seq109 Length=35798 Score = 116 bits (128), Expect = 3e-21 Identities = 235/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||| || ||||| |||||| || | || || | || ||||||||||| | Sbjct 2880 ACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAATGTCAA 2939 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 ||| ||||| | ||||||||| || ||||||||||| |||||| || |||| || || Sbjct 2940 ACCCGGCATCAATCCTCGTTTCTTCATCCAAAATATGCAGGCAAACGACGCAGAGAAAAA 2999 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 || ||||| | || |||||||| ||||| ||||| | | || || ||| || Sbjct 3000 AATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTATTATCTTG 3059 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| | ||||| ||||||||| || | || || | || || | || Sbjct 3060 AATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCAATAGAGTT 3119 Query 16474 AAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 ||||| || || || | || | |||||| || | || || ||| || Sbjct 3120 GAATAA--CATCGAACGCTCTGGTGCATTTCGAATATATGTTTGAATAAGCAAAGAGTAG 3177 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 |||| ||||||||||||||||| ||||| |||||||| || || Sbjct 3178 GTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACA 3224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500720488600