Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq35 185 1e-41 seq482 163 4e-35 seq344 87.8 2e-12 >seq35 Length=211330 Score = 185 bits (204), Expect = 1e-41 Identities = 386/568 (68%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| |||| |||||| || | ||| || | ||||| || |||| | Sbjct 160116 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 160057 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| |||||||| || | |||||| ||||| ||||| || || || ||||| Sbjct 160056 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 159997 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33758 || ||||| || ||||||||||| | || | ||| || | ||||| | | | |||| Sbjct 159996 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 159937 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 159936 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 159877 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 159876 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 159817 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 159816 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGCGCCTCAGCGACC 159757 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | || ||||| | ||| || || || || |||||| ||| ||| Sbjct 159756 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 159697 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 34054 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 159696 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 159638 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 |||| | ||||| |||| ||||| |||||| | ||||| || || ||||| ||||| Sbjct 159637 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 159578 Query 34115 TTTATACATATTCCAGATGTCATGATAT 34142 || ||||| | ||| || | || |||| Sbjct 159577 CTTGTACATTTGCCATATCTGAT-ATAT 159551 >seq482 Length=177074 Score = 163 bits (180), Expect = 4e-35 Identities = 372/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||||||| || | ||| || |||| || || | ||||| ||| | || || Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| ||||| || | ||| || ||||||||||| || || ||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33757 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 124295 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 124296 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 124355 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 124356 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 124415 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 124416 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 124475 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 |||||||| | |||| || || | |||||| ||||| || || ||| ||| || Sbjct 124476 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 124535 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 34054 ||| || || | || || | || |||| ||||| | || | | | | ||||| Sbjct 124536 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 124595 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 124596 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 124655 Query 34115 TTTATACATATTCCA 34129 || ||||| | ||| Sbjct 124656 CTTGTACATCTGCCA 124670 >seq344 Length=30398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 62082 AGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 62141 ||||| |||||||| ||||| | || |||||||| |||||||||||||| ||||| Sbjct 13310 AGATAATACATTCCAGTTTTCAAGCCTTTTCTCCATCCATAAAAATGCATACTTGTTAGC 13251 Query 62142 TTGGA---ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 62198 | || ||| | ||| || | ||| ||||||| | |||||||| |||||| Sbjct 13250 T--GACCCATAGAT-GGAGAGGCAAGATGAATATTCAAACTCTGACTTTGGCAGATGAAC 13194 Query 62199 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTA 62258 || || | || | || | | | ||||| ||||| | ||||||||||| |||||| Sbjct 13193 GCGCCACGATCCACGGCAAGGTCCAAAATCGTTTTTTGAGAAATTTCCCAAACCGTTTTA 13134 Query 62259 TAAAC 62263 ||||| Sbjct 13133 TAAAC 13129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802240323280