Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq482 147 2e-30 seq109 116 3e-21 seq344 93.3 4e-14 seq51 84.2 2e-11 >seq482 Length=177074 Score = 147 bits (162), Expect = 2e-30 Identities = 249/358 (70%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 |||||| ||||| |||||||||||| |||| || || || || || ||| | |||| Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||||| || || || |||| ||| || || | ||| || || |||||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTG-TTGCTAGA 11805 |||||||| ||||| || ||||| || | ||| ||| || | | | | | ||| ||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 124295 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||||||| |||||| || ||||| || | ||| ||||||||||| |||| Sbjct 124296 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 124355 Query 11866 AAATAAAT----GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | || || || | || ||| | || |||||||| || | | | | Sbjct 124356 GAAGAGATATGCGCGTTGAT----TAAGATCCTTGACGTATGTATCGATAAGCAGAGAGT 124411 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 | |||| ||||||| |||||||| |||||| || ||||| || | || ||||| Sbjct 124412 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTC 124469 >seq109 Length=35798 Score = 116 bits (128), Expect = 3e-21 Identities = 243/356 (68%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| || ||| | ||||| || | || || |||||||| |||||||| || Sbjct 2880 ACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAATGTCAA 2939 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCA-GCAAATGAACCAGAAAAGA 11747 || ||||||||||||||||| || ||||||||||| ||| ||||| || |||| || | Sbjct 2940 ACCCGGCATCAATCCTCGTTTCTTCATCCAAAATAT-GCAGGCAAACGACGCAGAGAAAA 2998 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTT-GCTA 11803 | || || || | |||||||||||||| | | ||| || | | || || || Sbjct 2999 AAATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTATTATCTT 3058 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 || ||||| | ||||| | ||||| | || | ||| || ||||| |||| | Sbjct 3059 GA-ATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCAATAGAG 3117 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || ||||| | ||| || || | |||||| | || | ||| || Sbjct 3118 TTGAATAACATCGAACGCTCTGGTGCATTTCGAATATATGTTTGAATAAGCAAAGAGTAG 3177 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||| ||||||||||| ||||| || || || ||||||||||| || ||||| Sbjct 3178 GTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCGCCTC 3233 >seq344 Length=30398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| |||| | ||||| || || ||| ||||||||| |||||||||||||||| Sbjct 13352 TCAACAGTGATCTGAATAGGCCGTGCAGCTGATCTTGTTCTCAGATAATACATTCCAGTT 13293 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | || ||||||||| |||||||||||||| || || | | | ||| Sbjct 13292 TTCAAGCCTTTTCTCCATCCATAAAAATGCATACTTGTTAGCTGACCCATAGATGGAGAG 13233 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || ||| |||||||| || ||||| || | || | || | Sbjct 13232 GCAAGATGAATATTCAAACTCTGACTTTGGCAGATGAACGCGCCACGATCCACGGCAAGG 13173 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 || ||||| ||||||||| || ||||||||||||||||| Sbjct 13172 TCCAAAATCGTTTTTTGAGAAATTTCCCAAACCGTTTTATA 13132 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAG-CGCATTGTTTTAACGTATCAAATATAC 38353 |||||| ||||| || |||||| || | ||| |||| | ||| ||||| || ||||| | Sbjct 11609 TCCTATACCACCAGC-TGTTTTACTAATCAAGGCGCAGTTTTTCAACGTCTCGAATATTC 11551 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAG 38413 |||| ||| || || || || | | |||||| |||||||| ||| | |||| Sbjct 11550 CTTCAATAGAATCTTCTTTCATGCAGACCAAAAAACACGATGACATTTGGGGCGAAGGAG 11491 Query 38414 TTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTAT 38473 | || || | || | || |||| |||||| |||| || || |||| | || | Sbjct 11490 TACCTGCACTGAAAAGCGTCGGAGTTGCATGAGTGAAATATCGCTCGGACATAAGGTTGT 11431 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 | || | | |||| || |||||| | || || || || | || || | |||||||| Sbjct 11430 ACGTCTGCAACACATGCTCAATATCATCTCCATGTATTCCGACAGCAACACGCATTAGCA 11371 Query 38534 TATGTTGTGG 38543 ||||||| || Sbjct 11370 TATGTTGCGG 11361 >seq51 Length=295103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 38295 TCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATAC 38353 |||||| ||||| || || |||| | || ||||| || | ||| | ||||| | |||| Sbjct 220423 TCCTATGCCACCGGC-TGATTTGCTGATCAAAGCACAGTTTTTCAGGGTATCGTAGATAC 220365 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAG 38413 |||| ||| ||||| || || | | || || |||||||||||| | || | Sbjct 220364 CTTCGATAGAATCATCTTTCATGCAAACAAGGAAGCATGAGGACATTTGAGGCGAAGGGG 220305 Query 38414 TTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTAT 38473 | ||||| || || | || |||| ||||| |||| || || |||| || | Sbjct 220304 TACCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAAATATCGCTCGGACATGAGGTTGT 220245 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 |||||| | |||| || ||||| | ||||| || || | || |||| ||| | || Sbjct 220244 ATGTTTGCAAGACATGCTCAATATCGTCTCCGTGTATCCCAACAGCGACCCGCATGATCA 220185 Query 38534 TATGTTGTGG 38543 |||||||||| Sbjct 220184 TATGTTGTGG 220175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513373851440