Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq482 156 4e-33 seq109 141 9e-29 >seq482 Length=177074 Score = 156 bits (172), Expect = 4e-33 Identities = 319/468 (68%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| ||||| ||| | || ||||||| || || || ||||||||| | |||| Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||||| || || || |||||||| || || | ||| || ||||| ||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCG 14049 |||||||| || ||||| || || | |||| ||| |||| | ||||| ||||| | Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAG 124294 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 |||||||||| ||||| || | ||| || || | |||||||| || || | Sbjct 124295 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 124354 Query 14110 TAAATAAATATTC-CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || | |||| | | | || || | |||| | ||||||||| ||||| | || Sbjct 124355 CGAAGAGATATGCGCGTTGATTAAGATCCTTG--ACGTATGTATCGATAAGCAGAGAGTA 124412 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||||| || | ||||||||| ||| || || ||||||||| | | || || | Sbjct 124413 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 124472 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| |||| | || || |||||| || || ||||| ||| || Sbjct 124473 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 124532 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14335 ||||| ||||| | | || | || || | |||| |||||||| Sbjct 124533 GGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTT 124580 >seq109 Length=35798 Score = 141 bits (156), Expect = 9e-29 Identities = 379/569 (67%), Gaps = 13/569 (2%) Strand=Plus/Plus Query 13865 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13924 ||| | ||| ||||| || ||| | || ||||| | ||||| ||||| |||||||| Sbjct 2874 AATAAGACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAA 2933 Query 13925 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA-GCAAATGACCCGG 13983 ||| || || ||||||||||||||||| || | |||||||| |||| ||||| ||| | | Sbjct 2934 TGTCAAACCCGGCATCAATCCTCGTTTCTTCATCCAAAATA-TGCAGGCAAACGACGCAG 2992 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 | || || || || || | || ||||| |||| || || ||| |||| | ||| | Sbjct 2993 AGAAAAAAATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTAT 3052 Query 14044 TGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 | | | || ||||| | ||||||| | |||| | || || | || |||||| Sbjct 3053 TATCTTGA-ATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCA 3111 Query 14103 ATAGCATTAAATAA-ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14161 |||| || ||||| || | |||| | | || ||| ||||| | |||||| || Sbjct 3112 ATAGAGTTGAATAACATCGAAC-GCTCTGGTGCATTTCGAATATATGTTTGAATAAGCAA 3170 Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 || ||||||| || || || ||||| ||||| |||||||| || || | || Sbjct 3171 AGAGTAGGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCGC 3230 Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 |||| | |||| ||| | |||| || ||| || || || |||||||| Sbjct 3231 CTCCGGCACCTGTATTTCGTTGGAAAAATGACAAATCAGATTCTCGTTTACAATACCATC 3290 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT-- 14339 || ||||| || |||| | | || ||| ||| ||| | | ||||||| Sbjct 3291 CGACGCAGCAAAGAACGCCAGGACGCGAGAAACGAAGAATTTCTCATTAGCGTTGAGTTT 3350 Query 14340 -TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 || ||||| ||| | || || |||||||| | || || |||||| || | | Sbjct 3351 GTTATTCCAGTCGTTGATGTCATTCGAAAGATCAATCTCTTCCGATGTCCAGAA--TGAC 3408 Query 14399 GA--CAGCTTTTTTATACATTACCCATAT 14425 || ||||||||| |||||| ||| || Sbjct 3409 GATTGAGCTTTTTTGTACATTGACCAAAT 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716300633400