Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq482 141 9e-29 seq109 118 1e-21 >seq482 Length=177074 Score = 141 bits (156), Expect = 9e-29 Identities = 374/563 (66%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 13566 AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA-- 13623 ||| ||||| |||| ||| |||| || || || ||||||| |||| || || | Sbjct 124023 AGTCAAAAAATCTTGTTCGATAGCAACCGCTTCCGTTATAATTTTCTTGATGATACCCGG 124082 Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683 || | || | |||||||| | || | |||||| ||||| ||| | || Sbjct 124083 TTGGGCGGGGCGC--TTTAGATGGGTGGTAAGGAGACACGCGAAATCGGTATGTAAACCT 124140 Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||||| || || || ||||||||| | |||| || ||||||| || || || ||| Sbjct 124141 TCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCGCGCTTCTTT 124200 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 ||||| || || | |||||| || || ||||| || |||||||| || ||||| || || Sbjct 124201 AACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCAGCGAATGCC 124260 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | | || ||| |||| | ||||| ||||| ||||||||||| ||||| || | Sbjct 124261 ACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAGATATCCATTTGAGGGCCCAGTCGGC 124319 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC-CTTCTCTTTAG 13921 ||| || || | |||||||| ||||| | ||| | || | | | | || || Sbjct 124320 TTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGCGTTGATTAAG 124379 Query 13922 -TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 | |||| | ||||||||| ||||| | || ||||||| || | |||||| || Sbjct 124380 ATCCTTG--ACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGTTTTCCATC 124437 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTT 14040 ||| || || |||||||| | | || || | ||| || || |||| | Sbjct 124438 ATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTGAAAAGCGC 124497 Query 14041 TCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14100 || || ||||| || || ||||| ||| || ||||| ||||| | | || | Sbjct 124498 TCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGACGTGGGTG 124557 Query 14101 ATAAAGTATTGCTCTTCATTGTT 14123 || || | |||| |||||||| Sbjct 124558 ATGAAATGACGCTCGTCATTGTT 124580 >seq109 Length=35798 Score = 118 bits (130), Expect = 1e-21 Identities = 374/569 (66%), Gaps = 13/569 (2%) Strand=Plus/Plus Query 13653 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13712 ||| | ||| ||||| || ||| | || ||||| | ||||| ||||| |||||||| Sbjct 2874 AATAAGACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAA 2933 Query 13713 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA-GCGAATGATCCGG 13771 ||| || || ||||||||||||||||| || | |||||||| |||| || || || | | Sbjct 2934 TGTCAAACCCGGCATCAATCCTCGTTTCTTCATCCAAAATA-TGCAGGCAAACGACGCAG 2992 Query 13772 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT 13831 | || || || || || | || ||||| |||| | || ||| |||| | ||| | Sbjct 2993 AGAAAAAAATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTAT 3052 Query 13832 TGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 | | |||| ||||| | ||||||| | |||| | || || | || ||||| Sbjct 3053 TATCTTGA-ATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCA 3111 Query 13891 ATTGCATTGAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949 || | |||||||| || | |||| | | || ||| ||||| | |||||| || Sbjct 3112 ATAGAGTTGAATAACATCGAAC-GCTCTGGTGCATTTCGAATATATGTTTGAATAAGCAA 3170 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 || ||||||| || || || || || ||||| |||||||| ||||| | || Sbjct 3171 AGAGTAGGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCGC 3230 Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 || | | |||| || | |||| || || || || ||||||||||| Sbjct 3231 CTCCGGCACCTGTATTTCGTTGGAAAAATGACAAATCAGATTCTCGTTTACAATACCATC 3290 Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT-- 14127 || ||||| || |||| | | || ||| ||| ||| | | ||||||| Sbjct 3291 CGACGCAGCAAAGAACGCCAGGACGCGAGAAACGAAGAATTTCTCATTAGCGTTGAGTTT 3350 Query 14128 -TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186 || ||||| ||| | || || |||||||| | || || |||||| || | | Sbjct 3351 GTTATTCCAGTCGTTGATGTCATTCGAAAGATCAATCTCTTCCGATGTCCAGAA--TGAC 3408 Query 14187 GA--CAGCTTTTTTATACATTACCCATAT 14213 || ||||||||| |||||| ||| || Sbjct 3409 GATTGAGCTTTTTTGTACATTGACCAAAT 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577128415640