Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq35 179 5e-40 seq482 168 9e-37 seq344 91.5 2e-13 >seq35 Length=211330 Score = 179 bits (198), Expect = 5e-40 Identities = 385/571 (67%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||| ||||||||| | ||| || | ||||| || |||| | Sbjct 160116 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 160057 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||||| |||||||| || | |||||| || ||||| || || ||||| ||||| Sbjct 160056 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 159997 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCGGCACT--GTCATGT 42241 || ||||| || || |||||||| | || | ||| || | ||||| | |||| Sbjct 159996 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 159937 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 159936 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 159877 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || | | ||| | ||||| | ||||| ||||| | |||| || | Sbjct 159876 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 159817 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || |||||||| || | ||||| | ||| Sbjct 159816 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGCGCCTCAGCGACC 159757 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | | || ||||| | ||| ||||| || || || ||| ||| ||| Sbjct 159756 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 159697 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT-------TTATT 42534 || ||||| | ||| | || || | |||| || ||| | | || || Sbjct 159696 AAGAACGCGAGGACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGGTTGTT 159641 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| |||| | ||||| |||| ||| | ||||| | ||||| || || || || || Sbjct 159640 CCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGC 159581 Query 42595 CTTTTTATACATATTCCAGATATCATGATAT 42625 ||| || ||||| | || ||||| |||||| Sbjct 159580 CTTCTTGTACATTTGCC--ATATC-TGATAT 159553 >seq482 Length=177074 Score = 168 bits (186), Expect = 9e-37 Identities = 371/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||||||| || | ||| ||||||| || || | ||||| ||| | || || Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || | ||| || || || || || || |||||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATG 42240 |||||| || || || || || || | | ||||||| || || | | ||||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 124295 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 124296 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 124355 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||||| || |||| ||| || || ||||||||||| | ||| || | Sbjct 124356 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 124415 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| ||||||| |||||| || || || || || || || | | ||||| | | Sbjct 124416 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 124475 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || ||||| | |||| || || | |||||||||||| || |||||| ||| || Sbjct 124476 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 124535 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCCA 42537 ||| || || | || || | || |||| ||||| ||||| | ||||| Sbjct 124536 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 124595 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | ||| | || | || | ||||| ||||| || ||||||||||| || Sbjct 124596 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 124655 Query 42598 TTTATACATATTCCA 42612 || ||||| | ||| Sbjct 124656 CTTGTACATCTGCCA 124670 >seq344 Length=30398 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 70837 AGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 70896 ||||| ||||| || ||||| | || |||||||| |||||||||||||| ||||| Sbjct 13310 AGATAATACATTCCAGTTTTCAAGCCTTTTCTCCATCCATAAAAATGCATACTTGTTAGC 13251 Query 70897 TTGGA---ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAG 70953 | || |||| | ||| ||| | |||||||||| ||||||||| |||||| Sbjct 13250 T--GACCCATAGAT-GGAGAGGCAAGATGAATATTCAAACTCTGACTTTGGCAGATGAAC 13194 Query 70954 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 71013 || || | || | || | | | ||||| ||||| | ||||||||||| |||||| Sbjct 13193 GCGCCACGATCCACGGCAAGGTCCAAAATCGTTTTTTGAGAAATTTCCCAAACCGTTTTA 13134 Query 71014 TAAAC 71018 ||||| Sbjct 13133 TAAAC 13129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122832592760