Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq344 91.5 2e-13 seq338 84.2 3e-11 >seq344 Length=30398 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 96820 CCAGTGGCCTAGTGCCAATGC-TCAGAATGTACAATGCAATGTCACGATACGTTACACAG 96878 ||| ||| |||||||||||| |||| | | || || ||| ||||||| || ||| Sbjct 11735 CCAATGGGATAGTGCCAATGCTTCAG-GTCTTTAACGCTATGGCACGATATGTAGATCAG 11793 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 || || || ||||| || || | | || | || | ||||||||||| |||||| || Sbjct 11794 GGTGGTAACAAACGCCCGGGTTCATTTGCAATTTATATAGAACCTTGGCATGCGGACATT 11853 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 || || ||||||| |||| |||||| ||| || || ||| || | || ||| Sbjct 11854 TTCGAGATTATCGATCTGCGGAAAAACCATGGAAAAGAGGAACTACGGGCTCGTGATTTG 11913 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTT 97027 || ||||| | ||||| ||||| ||||| Sbjct 11914 TTCTATGCGTTGTGGGTTCCAGACTTGTT 11942 >seq338 Length=27447 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 |||||||| | | | |||| | | |||||||| | | || |||| | ||||| Sbjct 3223 ACAAACGGTTATTCTAATGGCATTATACCAATGCTTCGTGTATATGATGCTACAGCACGA 3164 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || ||| || || || |||||||| ||||| |||| || ||||| | ||||||||| Sbjct 3163 TATGTTGATCAAGGGGGTAATAAACGACCAGGGTCTATCGCTATCTACGTTGAACCTTGG 3104 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || | || |||| || | || | ||||||| ||| |||| || || || Sbjct 3103 CATCCTGATATTTTCGATATAGTCAACTTGCGCAAGAACCATGGCAAGGAGGAACTTCGT 3044 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTT 97027 || | || ||||| |||||||| ||| | |||||| |||| Sbjct 3043 GCTCGTGATTTGTTCTATGCACTATGGATTCCAGATCTGTT 3003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041127418760