Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq482 141 8e-29 seq109 136 3e-27 >seq482 Length=177074 Score = 141 bits (156), Expect = 8e-29 Identities = 297/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || ||||| || || |||||||||| || || |||||||||||| | ||||| Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || ||||| || || || || || | ||| || || | ||| ||||| || |||||||| Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 ||||| || || || || || || | ||| || || || | || || ||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 124295 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 |||||| || |||||||| ||||| | || | ||| || |||||||||||| Sbjct 124296 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 124355 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC----TAT 13445 || | ||| || ||| || | | |||| |||| |||||| | Sbjct 124356 GAAGAGATATGCGCGTTGATTAAGATC----CTTGACGTATGTATCGATAAGCAGAGAGT 124411 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 | |||| ||||||| ||||||||| ||||||||| |||||||| | | ||||| | Sbjct 124412 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAG 124471 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 | | || |||||| |||| | || | |||||||| || || |||||| | Sbjct 124472 CTGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 124531 Query 13566 CAGCaaaaaaaGCAAGTATGTG 13587 | ||||| || ||||| | ||| Sbjct 124532 CGGCAAAGAATGCAAGGACGTG 124553 >seq109 Length=35798 Score = 136 bits (150), Expect = 3e-27 Identities = 267/389 (69%), Gaps = 22/389 (6%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| || |||| ||||||||| | || || || || ||||||||||| | Sbjct 2880 ACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAATGTCAA 2939 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA-GCAAACGAACCCGaaaaaa 13268 ||||||||| | |||||||| || ||||||||||| ||| |||||||| | || |||| Sbjct 2940 ACCCGGCATCAATCCTCGTTTCTTCATCCAAAATAT-GCAGGCAAACGACGCAGAGAAAA 2998 Query 13269 aTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT 13328 | || ||||| | |||||||| |||| ||| | || || | || || ||| | Sbjct 2999 AAATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTATTATCTT 3058 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 ||||||| ||||| ||||||||| || | ||| ||| |||| || | || Sbjct 3059 GAATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCAATAGAGT 3118 Query 13389 TAAATAA-AT--AA---tttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 | ||||| || || | | | | || || || | ||| | | ||||||| Sbjct 3119 TGAATAACATCGAACGCTCTGGTGCATT----TCGAATA------TATGTTTGAATAAGC 3168 Query 13443 TA----TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | || |||| ||||||||||| |||||| || ||||||||||| ||||| | Sbjct 3169 AAAGAGTAGGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGC 3228 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAA 13527 ||||| | ||||| | |||| | |||| Sbjct 3229 GCCTCCGGCACCTGTATTTCGTTGGAAAA 3257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972152181302