Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq250 150 4e-31 seq1072 122 2e-22 seq482 93.3 1e-13 seq102 84.2 5e-11 >seq250 Length=164446 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || |||||||| || |||||||| || || ||||| | || ||| Sbjct 133696 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 133637 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| || ||||||||||| || || | ||||| |||||||| || || || |||||| Sbjct 133636 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 133577 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||| || ||||| || | |||||| | || ||||| | || || ||| Sbjct 133576 TGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTC 133517 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | || || ||||| ||||||||| Sbjct 133516 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 133484 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| ||||||||||| ||||||||||| || || | ||| || || | Sbjct 133918 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 133859 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || ||||||||||| || | | |||||| || ||||| || |||||||| ||||||||| Sbjct 133858 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 133799 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || ||||| || | || || || || ||||| || || || ||||| || Sbjct 133798 TTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCG 133739 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||| || ||||| |||||||| Sbjct 133738 GTCAATGTCTTCACAAAGATCTGCAT 133713 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | |||||||| |||||||| || |||||| Sbjct 133486 ATTCCACCACGAAGACGAAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCA 133427 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || ||||| ||||| ||||| || | | ||||||||||||| Sbjct 133426 GAAAGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGA 133367 Query 104450 GGTAT 104454 || || Sbjct 133366 GGAAT 133362 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || || ||||| ||||| ||||| || | || || || ||| ||||| Sbjct 133299 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACCTCA 133240 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 133239 AGGGTAATAGTCTTCCCAGTAAGAGTTTTGACGAATATTTGCAT 133196 >seq1072 Length=303801 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || || || | || || |||||||||||||| || ||| Sbjct 211031 ATACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCA 211090 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || | || || ||||||||||| || | ||||| ||||| Sbjct 211091 GAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGC 211150 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | || || | || Sbjct 211151 GGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCA 211210 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || ||||| || || || |||||||| Sbjct 211211 ACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 211260 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | ||| || || | || || ||| Sbjct 210836 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCA 210895 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| || || || || || ||||| ||||| || ||| Sbjct 210896 GCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTT 210955 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || ||||| ||||| || || || || Sbjct 210956 ACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTC 211015 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 211016 TTGACGAAGATCTGCAT 211032 >seq482 Length=177074 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 11/211 (5%) Strand=Plus/Minus Query 269081 AAATCTGAATGGGCTCTGAAATGGATA-------AACGATAGCGCGCCTTACGGAGAAAG 269133 ||| | || ||||| || ||||||||| ||||| ||| | || | ||| || Sbjct 124322 AAAGCCGACTGGGCCCTCAAATGGATATCTGACAAACGA-AGCAC---TTTTGCAGAGAG 124267 Query 269134 GTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTT 269193 || || || || || ||||| || || || || ||||| ||||| || || | || || Sbjct 124266 ATTGGTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTT 124207 Query 269194 TTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAG 269253 ||||| ||||| | ||||| ||||| || |||||| || ||||| | || ||| | Sbjct 124206 CTGGTTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCG 124147 Query 269254 GGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || ||||||||||| ||| ||||| ||| Sbjct 124146 AGATGAAGGTTTACATACCGATTTCGCGTGT 124116 >seq102 Length=127478 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 || |||||| | || | || ||||| |||||||| |||||||| || ||||||| || Sbjct 68441 CCGAAGTACCAAGTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCC 68382 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTAT 104454 ||||| ||||| ||||| || || || | | |||||||||||||| || Sbjct 68381 ATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAAT 68331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369618278308