Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq91 122 1e-23 seq407 120 5e-23 seq29 118 2e-22 seq346 96.9 5e-16 seq139 96.9 5e-16 >seq91 Length=90471 Score = 122 bits (134), Expect = 1e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| |||||||| || || || |||||||| || ||||||||||| ||||| ||| | || Sbjct 86484 AGGTATCACCAAACCTGCGATTCGTCGTCTCGCCCGTCGTGGTGGTGTCAAACGTATTTC 86543 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || || |||||||||||| || | ||| || |||||||||||| ||| ||||||| Sbjct 86544 CGGTCTGATCTATGAAGAGACGCGAGGTGTATTAAAGATCTTCCTCGAGAATGTTATCCG 86603 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAA 16620 ||| || | ||| ||||||||||| || Sbjct 86604 TGACTCTGTTACCTACACCGAGCACGCGAA 86633 >seq407 Length=225703 Score = 120 bits (132), Expect = 5e-23 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||||| || || || |||||||| || ||||||||||||||||||||| |||| Sbjct 191815 AGGAATCACCAAACCTGCCATTCGTCGTCTCGCCCGTCGTGGTGGAGTCAAGCGTATCTC 191874 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | | || ||||| | ||| | ||| ||||||| ||||| | | ||||| | Sbjct 191875 TGGTCTCATTTACGAAGAAACTCGCGGTGTACTGAAGATTTTCCTGGAAAATGTTATTCG 191934 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAGACT 16630 |||| | | || |||||||||||||||| ||||| || Sbjct 191935 TGATTCCGTAACATACACCGAGCACGCTAAACGGTAAGTCT 191975 >seq29 Length=257228 Score = 118 bits (130), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 16467 TCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTG 16526 ||| ||| ||||| || || |||||||||||||| || ||||||||||| || |||||| Sbjct 255917 TCCCAGGTATCACGAAACCCGCTATCCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTA 255858 Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTA 16586 |||| || | |||| ||||| | || | ||| | ||||||||| | ||| ||||| Sbjct 255857 TCTCCGGTCTCATCTACGAAGAAACCCGCGGTGTGCTCAAGATCTTCTTGGAGAACGTTA 255798 Query 16587 TCCATGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAG 16627 | | |||| || || ||| || || |||||||||| ||||| Sbjct 255797 TTCGTGATTCTGTCACCTACACTGAACACGCTAAACGGTAAG 255756 >seq346 Length=92095 Score = 96.9 bits (106), Expect = 5e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || ||||| || ||||| || ||||| ||||||||||| || || |||||| | || Sbjct 23889 AGGTATTACCAAACCCGCTATTCGCCGTCTTGCTCGTCGTGGAGGTGTAAAGCGTATTTC 23948 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||| | |||| ||| || ||||||||||| ||| || || | Sbjct 23949 TGGTCTCATCTACGAAGAAACCCGTGGTGTATTAAAGATCTTCCTTGAGAATGTCATTCG 24008 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| || | ||||| || || |||||||| Sbjct 24009 TGACTCTGTAACGTATACTGAACATGCTAAACG 24041 >seq139 Length=106746 Score = 96.9 bits (106), Expect = 5e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || ||||||||| | || Sbjct 67066 AGGCATAACAAAGCCTGCTATTCGTCGTCTCGCACGTCGTGGAGGTGTCAAGCGTATTTC 67125 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| || |||||||||||| ||||| ||| | || || |||||| Sbjct 67126 TGGTCTGATCTATGAAGAGACTCGTGGTGTCCTCAAAATTTTCCTC 67171 Score = 96.9 bits (106), Expect = 5e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || || || ||| |||| Sbjct 80540 AGGTATAACAAAGCCCGCTATTCGTCGTCTTGCGCGTCGTGGAGGTGTTAAACGTATCTC 80481 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| | |||| ||||||| ||||| |||| | |||||||||||| Sbjct 80480 TGGTCTTATCTACGAAGAGACTCGTGGTGTTCTTAAGATCTTCCTC 80435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073416187043