Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq35 190 3e-43 seq482 181 1e-40 seq344 87.8 2e-12 >seq35 Length=211330 Score = 190 bits (210), Expect = 3e-43 Identities = 384/564 (68%), Gaps = 8/564 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| |||| |||||| || | ||| || || ||||| || |||| | Sbjct 160116 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 160057 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| |||||||| || | |||||| ||||| ||||| || ||||| ||||| Sbjct 160056 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 159997 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33480 || ||||| || ||||||||||| | || | ||| || | ||||| | | | |||| Sbjct 159996 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 159937 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 159936 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 159877 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 159876 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 159817 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 159816 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGCGCCTCAGCGACC 159757 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 159756 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 159697 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33776 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 159696 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 159638 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| | ||||| |||| ||| | |||||| | ||||| || || ||||| ||||| Sbjct 159637 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 159578 Query 33837 TTTATACATGTTCCAGATGTCATA 33860 || ||||| | ||| || | ||| Sbjct 159577 CTTGTACATTTGCCATATCTGATA 159554 >seq482 Length=177074 Score = 181 bits (200), Expect = 1e-40 Identities = 376/555 (68%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||||||| || | ||| || |||| || || || ||||| ||| | || || Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||| ||||| || | ||| || ||||||||||| || |||||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33479 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 124295 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 124296 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 124355 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 124356 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 124415 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 124416 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 124475 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| | |||| || ||| || |||||| ||||| || |||||| ||| || Sbjct 124476 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 124535 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 33776 ||| || || | || || | || |||| ||||| | || | | | | ||||| Sbjct 124536 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 124595 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 124596 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 124655 Query 33837 TTTATACATGTTCCA 33851 || ||||| | ||| Sbjct 124656 CTTGTACATCTGCCA 124670 >seq344 Length=30398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 62031 AGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 62090 ||||| |||||||| ||||| | || |||||||| |||||||||||||| ||||| Sbjct 13310 AGATAATACATTCCAGTTTTCAAGCCTTTTCTCCATCCATAAAAATGCATACTTGTTAGC 13251 Query 62091 TTGGA---ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 62147 | || ||| | ||| || | ||| ||||||| | |||||||| |||||| Sbjct 13250 T--GACCCATAGAT-GGAGAGGCAAGATGAATATTCAAACTCTGACTTTGGCAGATGAAC 13194 Query 62148 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 62207 || || | || | || | | | ||||| ||||| | ||||||||||| |||||| Sbjct 13193 GCGCCACGATCCACGGCAAGGTCCAAAATCGTTTTTTGAGAAATTTCCCAAACCGTTTTA 13134 Query 62208 TAAAC 62212 ||||| Sbjct 13133 TAAAC 13129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932007875160