Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq109 109 1e-18 seq51 107 5e-18 seq344 105 2e-17 seq35 100 7e-16 seq482 89.7 1e-12 >seq109 Length=35798 Score = 109 bits (120), Expect = 1e-18 Identities = 289/434 (67%), Gaps = 7/434 (2%) Strand=Plus/Minus Query 22216 CTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCA 22275 || || ||||||||| | | || ||||| || |||||||| | | ||||| | Sbjct 3311 CTGGCGTTCTTTGCTGCGTCGGATGGTATTGTAAACGAGAATCTGATTTGTCATTTTTCC 3252 Query 22276 TCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAAT 22335 ||||| || || ||||| | |||||||||||| | || || ||||| || ||| Sbjct 3251 AACGAAATACAGGTGCCGGAGGCGCGGTGTTTCTATGGTTTCCAGATTATGATGGAGAAT 3192 Query 22336 GTTCACGCGGAAACATATTCTATGATGCTACAGTCAC-TCGTAGAAGATAAAGACGAACA 22394 |||| | ||||| || ||| || | | || || | | ||| || | || | Sbjct 3191 ATTCATTCTGAAACCTACTCTTTGCTTATTCAAACATATATTCGAA-ATGCACCAGAGCG 3133 Query 22395 ACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGC 22454 | |||||| | | ||| || |||| | || || | || ||| | ||||| Sbjct 3132 TTCGATGTTATTCAACTCTATTGAAACTATTCCGTGCATCAATAGAAAAGCAAAATGGGC 3073 Query 22455 GCTGAAATGGATGAACAATGA-ACGTTCA--TTCGCGGAACGTCTTATTGCATTTGCTGT 22511 ||| | ||||| | || | | |||| || || || ||| | | |||||||| | Sbjct 3072 GCTTCAGTGGATTCAAGATAATAAATTCACTTTTGCAGAGCGTTTGGTAGCATTTGCAGC 3013 Query 22512 GGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG-TGCAATCTTTTGGCTaaaaaaaCGTG 22570 | | ||||||||||| || |||| | ||| |||| | |||||| | || ||||| | Sbjct 3012 GATCGAAGGCATTTTTTTCTCTGCGTCGTTTGCCTGCA-TATTTTGGATGAAGAAACGAG 2954 Query 22571 CAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATA 22630 | | ||||||||| | || ||||||||||| | |||||| | ||||| || | |||| Sbjct 2953 GATTGATGCCGGGTTTGACATTTTCAAATGAACTCATTAGCTGCGATGAAGGAATGCATA 2894 Query 22631 CCGATTTTGCGTGT 22644 |||| ||||| ||| Sbjct 2893 CCGAATTTGCCTGT 2880 >seq51 Length=295103 Score = 107 bits (118), Expect = 5e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||||| |||||| || ||||||||||| | || || |||||||| | || | Sbjct 220515 TTACATTGCCGGCACGAATGGGTACTCGAATGGTATTGTGCCAATGCTTCGGGCGT---A 220571 Query 363795 CAA---TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 ||| |||||| | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 220572 CAATGCTACTGCACGATATGTCGACCAAGGTGGTAACAAGCGTCCTGGGGCTTTCGCTAT 220631 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 |||||||| ||| ||||| ||||| || | | | | || | |||| || || Sbjct 220632 CTATCTCGAACCTTGGCATGCTGATATCTTCGCGATGATCGATTTGAGGAAGAATCATGG 220691 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| |||| || |||||| | |||||||| || ||| || Sbjct 220692 CAAAGAGGAAGTGCGCGCCCGTGATTTATTCTATGCTCTATGGATT 220737 >seq344 Length=30398 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||||| || || || |||||| | || || ||||||| || ||| || || | Sbjct 11717 GCGGCACGAATGGTTATTCCAATGGGATAGTGCCAATGCTTCAGGTCTTTAACGCTATGG 11776 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | || || || |||||||| || ||| || | ||||| || ||| | || | Sbjct 11777 CACGATATGTAGATCAGGGTGGTAACAAACGCCCGGGTTCATTTGCAATTTATATAGAAC 11836 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 || ||||| || ||||| ||| || | || || ||||||||| |||||||||||| Sbjct 11837 CTTGGCATGCGGACATTTTCGAGATTATCGATCTGCGGAAAAACCATGGAAAAGAGGAAC 11896 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 | || || |||||| |||||||||| | |||||| | ||| Sbjct 11897 TACGGGCTCGTGATTTGTTCTATGCGTTGTGGGTTCCAGAC 11937 >seq35 Length=211330 Score = 100 bits (110), Expect = 7e-16 Identities = 146/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGTCTT 22497 ||||| || ||||| ||| ||||| | | |||| || |||| || ||||| Sbjct 159911 AAGGCCGAGTGGGCTCTGCGCTGGATCAGTGACGAACACTCGGTTTTCGGCGAGCGTCTC 159970 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 | || ||||||| ||||||||||||||||| ||||| | || | ||||||||| Sbjct 159971 GTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGG 160030 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 | || || |||| | | ||||| || | |||| ||||| ||| | || || || ||| Sbjct 160031 ATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGAT 160090 Query 22618 GAGGGTCTTCATACCGATTTTGCGTG 22643 |||||| | |||||||| || || || Sbjct 160091 GAGGGTATGCATACCGACTTCGCCTG 160116 >seq482 Length=177074 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 ||||| |||| || || || || || |||||||| | || | | || || ||| || Sbjct 124259 GCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTA 124200 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || || | | ||||| || ||||| | |||||| ||| | || ||||||||||| Sbjct 124199 AAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAA 124140 Query 22621 GGTCTTCATACCGATTTTGCGTGT 22644 ||| | ||||||||||| |||||| Sbjct 124139 GGTTTACATACCGATTTCGCGTGT 124116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321019825682