Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1127 140 2e-28 seq483 118 7e-22 seq250 93.3 3e-14 seq1072 84.2 1e-11 >seq1127 Length=23621 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6303 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6244 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6243 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6209 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4299 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4240 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 4239 CCCAATATTTAGCTTTA 4223 >seq483 Length=41345 Score = 118 bits (130), Expect = 7e-22 Identities = 256/379 (68%), Gaps = 12/379 (3%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| | || || || || || || ||||||||||||||| |||||| | || || | Sbjct 3639 CCAAAATTGAAGGCAAAGGGAATGGCATTAAAACCGTCATTCCTAACATGGCCGACGTAG 3698 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || ||| | | || ||| | ||||||| || |||| ||||| ||||||||||| | Sbjct 3699 CTCGTGCGTTGAGCCGTCCTCCTGCCTACCCAACCAAATTCTTCGGCTGCGAACTTGGGG 3758 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | ||||| ||||||| | || || || || | |||||| ||||| | ||| | || Sbjct 3759 CGCAGACCTCGTTTGATGAAAAGAATGAACGTTACATCGTAAACGGCGCTCATGATGCTA 3818 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | |||| ||| | ||||||||||| ||| ||| || || | || | ||| Sbjct 3819 ACCGCCTGCGGGAACTCCTTGACGGCTTCATTGACAAATTCGTCTTATGCAAGTCTTGCA 3878 Query 6472 ATAACCCGGAGACCGAGCTTATTGT-GTCTACCAAG-----AGAAACACCATCTCTCAGG 6525 | |||||||| || ||||| || | | | |||| || | |||| | | Sbjct 3879 AGAACCCGGAAACGGAGCTCATCATCCTAAAACAAGGTCGTAGCGAGGACATCATCCGTG 3938 Query 6526 GCTGCAAAGCGTGCGGTTACCATGGCA--AGC-TGGATTTATCACACAAACTCAACACCT 6582 ||||||||| |||||| | | ||| || | ||| | || ||||||| || | Sbjct 3939 ACTGCAAAGCCTGCGGTGAAC---GCACCGGCGTCGATATGCGTCATAAACTCACTACAT 3995 Query 6583 TCATACTGAAGAATCCTCC 6601 ||||| ||||||||||||| Sbjct 3996 TCATATTGAAGAATCCTCC 4014 >seq250 Length=164446 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 38108 CACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| |||||| || ||| || ||||| || || ||||| | ||| | || | Sbjct 133923 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 133864 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | || || ||||| ||||| || | || ||||| |||| || | ||||||||||||| Sbjct 133863 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 133804 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| ||| ||| ||||| | || ||| || | || || || | || || || | Sbjct 133803 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCT 133744 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || ||||| || |||||||| Sbjct 133743 TTCCGGTCAATGTCTTCACAAAGATCTGCAT 133713 >seq1072 Length=303801 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||| ||||| ||||| ||||| | ||| | || || | || Sbjct 211286 TGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGC 211345 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || ||||| ||||||||||||| || | ||| || || ||| || || Sbjct 211346 TTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTG 211405 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | || || ||| | || || || || || || ||||| ||||| Sbjct 211406 GCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTG 211465 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || || || || |||||| Sbjct 211466 AGGGTCTTAACAAAGATTTGCATG 211489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939235688281