Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq35 194 2e-44 seq344 91.5 2e-13 >seq35 Length=211330 Score = 194 bits (214), Expect = 2e-44 Identities = 388/568 (68%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| || | |||||| || | ||| || | ||||| || |||| | Sbjct 160116 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 160057 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| |||||||| || | |||||| |||||||| || || ||||| |||||| Sbjct 160056 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 159997 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 32837 || ||||| || || |||||||| | || | ||| || | ||||| | | | |||| Sbjct 159996 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 159937 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| ||||||| |||||||| || | ||||| || ||||| ||||||| | Sbjct 159936 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 159877 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || || | | ||| | ||||| | ||||| || || | |||| || | Sbjct 159876 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 159817 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||||||| || || || || || ||||||||||| | ||||| | | | Sbjct 159816 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGCGCCTCAGCGACC 159757 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 159756 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 159697 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33133 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 159696 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 159638 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 |||| | ||||| |||| ||||| |||||| | ||||| || || ||||| ||||| Sbjct 159637 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 159578 Query 33194 TTTATACATATTCCAGATGTCATGATAT 33221 || ||||| | ||| || | || |||| Sbjct 159577 CTTGTACATTTGCCATATCTGAT-ATAT 159551 >seq344 Length=30398 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 61886 AGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 61945 ||||| |||||||| ||||| | || |||||||| |||||||||||||| ||||| Sbjct 13310 AGATAATACATTCCAGTTTTCAAGCCTTTTCTCCATCCATAAAAATGCATACTTGTTAGC 13251 Query 61946 TTGGA---ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 62002 | || ||| | ||| || | ||| ||||||| | |||||||| |||||| Sbjct 13250 T--GACCCATAGAT-GGAGAGGCAAGATGAATATTCAAACTCTGACTTTGGCAGATGAAC 13194 Query 62003 GCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 62062 || || | || | || | | | |||||| ||||| | ||||||||||| |||||| Sbjct 13193 GCGCCACGATCCACGGCAAGGTCCAAAATCGTTTTTTGAGAAATTTCCCAAACCGTTTTA 13134 Query 62063 TAAAC 62067 ||||| Sbjct 13133 TAAAC 13129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616547299600