Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq250 140 3e-28 seq1072 129 5e-25 seq31 98.7 9e-16 >seq250 Length=164446 Score = 140 bits (154), Expect = 3e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| || ||||||| | || ||||||||||| Sbjct 133484 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTC 133543 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || |||| ||||| | ||| || || || || || || ||||||| Sbjct 133544 TGATACCATTGACAATGTGAAGGCAAAGATTCA-GGATAAGGAGGGTATCCCTCCTGACC 133602 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||| ||||| || || || ||||||||| |||||| | ||||| | Sbjct 133603 AACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATA 133662 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||||||||| || || ||| | || || Sbjct 133663 ATATCCAAAAAGAATCGACTCTTCATCTTGTTCT 133696 Score = 122 bits (134), Expect = 8e-23 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | || || ||||| ||| Sbjct 133713 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 133772 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | ||||| | ||| ||||||||||| ||||| || ||| Sbjct 133773 GACACTATCGA--CAATGTCAAGGCAAAGATTCA-GGACAAAGAAGGCATTCCTCCCGAC 133829 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || || || || || |||| ||| || | || || Sbjct 133830 CAACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTAT 133889 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| ||||| || || || ||| Sbjct 133890 AACATTCAGAAAGAGTCTACCCTTCAT 133916 >seq1072 Length=303801 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || || ||||||||| Sbjct 211260 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 211201 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| ||||| ||||| ||||| ||||||| Sbjct 211200 GACACTATTGA--CAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACC 211143 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| ||||| || || || |||| |||||| | ||||||| Sbjct 211142 AACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACA 211083 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| ||||| || || || || | || || | || ||||||| Sbjct 211082 ATATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 211034 >seq31 Length=238504 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| ||||| |||||||| | ||||| ||||| |||||| | || |||| || ||| Sbjct 175989 ATTCCCCCTGATCAACAGCGACTCATTTTCGCCGGAAAACAACTTGAGGATGGACGTACT 176048 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | |||||||| ||||| ||||||||||| || || |||||||| Sbjct 176049 CTGAGTGATTACAACATTCAGAAAGAATCCACCCTTCACTTAGTGCT 176095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317696408065