Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02]
1,951 sequences; 39,922,873 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq250 136 3e-27
seq1072 123 2e-23
>seq250
Length=164446
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||||| ||||| || || |||| | || ||||| | |
Sbjct 133485 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTCT 133544
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || | || ||| ||||| || ||||||||||| || || || |||
Sbjct 133545 GATACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAA 133604
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||||||||| ||||| || || ||| |||| ||| |||||| | || ||||| ||
Sbjct 133605 CAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAAT 133664
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428
|| ||||||||||| || | ||| | |||
Sbjct 133665 ATCCAAAAAGAATCGACTCTTCATCTTGTT 133694
>seq1072
Length=303801
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || ||| |||||||||| || || | |
Sbjct 211260 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 211201
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | || ||||| || |||||||| |||||||| || || |||
Sbjct 211200 GACACTATTGACAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 211141
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || ||||| ||||| ||||| |||||| ||||| | || ||||||||
Sbjct 211140 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 211081
Query 22399 ATTCAAAAAGAATCCACC 22416
||||| ||||| || |||
Sbjct 211080 ATTCAGAAAGAGTCAACC 211063
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||| || | || || |||||| ||||| | || || || | |
Sbjct 211488 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 211429
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || || || || |||||||| ||||| |||||||||
Sbjct 211428 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 211369
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || || |||||||| ||| | || ||| |||||| | || || ||||||
Sbjct 211368 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 211309
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || || || ||| | || | ||| | || | || |||||
Sbjct 211308 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 211262
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || ||| | ||||| || || || | |
Sbjct 211032 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 210973
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || | || || || || ||||||||||| ||||| || || ||
Sbjct 210972 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 210913
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| ||||| ||||| |||||| ||||| | ||||||||||||
Sbjct 210912 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 210853
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 210852 ATCCAGAAGGAGTCGAC 210836
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383
|| ||||| || |||||||||||||||||||| || || ||| | || ||| || |||
Sbjct 211611 ATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGAACC 211552
Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
| ||||| ||||||||||| || ||||||||
Sbjct 211551 CTTTCCGACTACAACATTCAGAAGGAATCCAC 211520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419718019786315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |