Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq250 150 4e-31 seq1072 123 6e-23 seq35 102 2e-16 seq482 84.2 5e-11 >seq250 Length=164446 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || |||||||||||||||||| || | Sbjct 133711 CCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAA 133652 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||| || ||||| || ||||| ||||| ||||| | ||| Sbjct 133651 AGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGG 133592 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || || ||||| || || || | ||| ||| || || Sbjct 133591 ATACCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACC 133532 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| ||||| ||||||| ||||||||| || ||||||||| Sbjct 133531 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 133484 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || |||||||| | ||||| || || || || || || ||||| || ||| Sbjct 133903 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 133844 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| || || |||||||| ||||| || || || || || || Sbjct 133843 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTG 133784 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || || || ||||||||||| ||||||| ||||| || Sbjct 133783 TCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAATGTCTTCACA 133724 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 133723 AAGATCTGCAT 133713 >seq1072 Length=303801 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || || | |||||||| || || || || || || || || || Sbjct 211070 TCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 211129 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||||| | || || ||||| || |||||||||||||| || || || Sbjct 211130 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTG 211189 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || ||| || || || || ||||||||||| || || || ||||||||| Sbjct 211190 TCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACG 211249 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 211250 AAGATCTGCAT 211260 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| |||||||| || || || || || || || || || Sbjct 210842 TCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 210901 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | || || || || || |||||||| ||||| || || || Sbjct 210902 ATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATTG 210961 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||| || || || || || |||||||| || || || ||||||||| Sbjct 210962 TCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGACG 211021 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 211022 AAGATCTGCAT 211032 >seq35 Length=211330 Score = 102 bits (112), Expect = 2e-16 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 ||||||| ||||| || | ||| |||||||||||| ||||| || ||||| | Sbjct 160283 TGATCGGCATGAACGCGACATTGATGTGTCAATATATCGAGTTCGTTGCCGATCGACTAC 160342 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || || ||||| | |||| ||||||| |||| ||| ||||||| ||||||||| Sbjct 160343 TCGTCGCTCTCGGCAACAAGAAGTTGTACAACTCGACGAACCCCTTCGACTTTATGGACA 160402 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA-TCAACGT 269328 | || ||||| |||| ||||| ||||| || || ||||| || ||| || |||| | Sbjct 160403 TGATCTCGCTTCAAGGGAAGACCAACTTTTTTGAGAAGCGGGTGTCCGATTACTCAAAG- 160461 Query 269329 CCTGGTGT 269336 ||||||| Sbjct 160462 GCTGGTGT 160469 >seq482 Length=177074 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/281 (67%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 268483 CTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTT--CCTC 268540 || ||| | ||||||||||| |||| ||| | || |||||| | || || || |||| Sbjct 124673 CTATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTC 124614 Query 268541 TTAACGCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATC 268599 || || || ||| |||||| ||| | | ||||| || || || || |||||| Sbjct 124613 ---ACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATC 124557 Query 268600 AAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCTTCAGACA 268659 | || | || | |||||||| | ||| ||||||||||||| |||||||| | Sbjct 124556 ACCCACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAG 124497 Query 268660 AACTTTGGTGTCGAAGTGATGGCACCAGAGGCACGACAATTCTATGCATATCAAACATTC 268719 |||| ||||||| ||| | ||||| || | || |||| | |||| | | Sbjct 124496 CGCTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATG 124437 Query 268720 AACGAATCCGTTCATAGTGAAATGTATGCACTTCTTATCGA 268760 | ||| ||||||| ||||| || | || |||||||| Sbjct 124436 ATGGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGA 124396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624911957778