Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq250 118 1e-21 seq1072 95.1 1e-14 >seq250 Length=164446 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| |||||||||||||| || || ||||| | | ||||| | ||| Sbjct 133696 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 133637 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || || || || ||||| ||||| || || || || || Sbjct 133636 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 133577 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | |||||| | ||||| || | || | |||| Sbjct 133576 TGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTC 133517 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||||||| || || || || |||||| Sbjct 133516 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 133484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || ||||| |||||||| || || | | || || | || || | | Sbjct 133918 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 133859 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | || | ||||| |||||||||||||| |||||||| || || || Sbjct 133858 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 133799 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 ||| ||| ||| || | || ||| | || || || | ||| | ||||| ||| Sbjct 133798 TTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCG 133739 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || || ||||| Sbjct 133738 GTCAATGTCTTCACAAAGATCTGCAT 133713 >seq1072 Length=303801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| ||||| || || || ||||||||||| | | ||||| | || || | | Sbjct 210827 AGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAAC 210886 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| ||||||| ||||||||||| || ||||| || || || || || || Sbjct 210887 TGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATC 210946 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGC 64415 || ||||||| || | || | ||| || || || || | ||| | ||||| | Sbjct 210947 TTCGCCTTTACATTGTCAATGGTGT--CCGACGACTCAACCTCCAGAGTAATCGTCTTTC 211004 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || || ||||| || ||||| Sbjct 211005 CTGTGAGGGTCTTGACGAAGATCTGCAT 211032 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || || ||||||||||| || | | |||||| | || Sbjct 211276 AAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATC 211335 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||||||||| | || || || || || ||||||||||| || || || || Sbjct 211336 TTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATC 211395 Query 64351 TTGTATTTT 64359 ||||| || Sbjct 211396 CTGTATCTT 211404 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| ||||| || | || || |||||||| ||||||||||| | Sbjct 211775 ACCGCCACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGA 211834 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||| ||||| ||||| || || |||| || || || ||||| ||||| Sbjct 211835 GAGAGTTCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAGACGTTGTTGGTCTGGAGG 211894 Query 64336 AAT 64338 ||| Sbjct 211895 AAT 211897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632614912440