Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq250 91.5 1e-13 seq35 86.0 6e-12 seq1072 84.2 2e-11 >seq250 Length=164446 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||| ||||| | ||||| ||||| | || || || | | Sbjct 133906 GACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCA 133847 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| | |||||||||||| ||||| || ||||||||||| ||| | |||| || Sbjct 133846 AAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTC-CTGAATCTTTGCCTTGAC 133788 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||| | || | ||| || || |||| || | Sbjct 133787 ATTG-TCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAATGTCT 133729 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 133728 TCACAAAGATCTGCAT 133713 >seq35 Length=211330 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 52638 TTTTTTACGGCCGCGCTGCCGGTCGAGCT-GCTGGGCATGAACGCGCAGTCCATGTGCGA 52696 |||||| | | |||||| || || |||| | | |||||||||||| | ||||| | Sbjct 160255 TTTTTTCCAGACGCGCTTCCTGTA-AGCTTGATCGGCATGAACGCGACATTGATGTGTCA 160313 Query 52697 GTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCA 52755 || |||||||| || || ||||| || | || ||||| || | | |||| | || Sbjct 160314 ATATATCGAGTTCGTTGCCGATCGACTACTCGTCGCTCTCGG-CAACAAGAAGTTGTACA 160372 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 || | || || || || |||||| ||| || |||||| | || ||||||||||||| Sbjct 160373 ACTCGACGAACCCCTTCGACTTTATGGACATGATCTCGCTTCAAGGGAAGACCAACTTTT 160432 Query 52816 TCGAGAAGCGAGT 52828 | |||||||| || Sbjct 160433 TTGAGAAGCGGGT 160445 >seq1072 Length=303801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | || | | |||||||||| |||||||||||||| Sbjct 211261 GCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGA 211320 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||| || || |||| ||||||| || ||||| || ||||| Sbjct 211321 AAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGG 211380 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || || || | || | || | ||| || | ||||| | ||||| Sbjct 211381 AATGCCCTCCTTATC-CTGTATCTTGGCCTTCACGTTG-TCGATCGTGTCTGAAGACTCG 211438 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| | || | |||||| || || || || || ||||| || |||||| || Sbjct 211439 ACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCATGCCT 211492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250297400720