Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq641 172 4e-37 seq186 91.5 1e-12 >seq641 Length=219978 Score = 172 bits (190), Expect = 4e-37 Identities = 459/693 (66%), Gaps = 14/693 (2%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||||||||||| ||||| | ||||| |||||||| | || || ||||| || ||| Sbjct 64286 TTATCAGCGGCAGAAACATTCAAGATACCGTTGGCATCGATGTCGAAGGTGACCTCGATT 64345 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | ||||||||||||| || | | ||| | || || || Sbjct 64346 TGAGGTACACCACGGGGAGCAGGTGGGATACCAGAAAGCTCGAATTTCCCAAGGAGGTTG 64405 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || |||||| |||||||||||||| | |||||| || ||| ||| ||| Sbjct 64406 TTGTCCTTAGTGCGAGCACGTTCACCCTCGAAGACTTGGATGAGCACACCAGGTTGGTTA 64465 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || | ||||||| || | || || ||| || | || ||||| | | || Sbjct 64466 TCGGCGTAAGTTGAGAAGGTTTCAGACTTCTTAGTCGGGACAGTGGTGTTACGCTTGATG 64525 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | |||||| | |||||| || ||||| | ||| || || || |||| ||| || | Sbjct 64526 AGTGCGGTCATCACACCACCAGCAGTTTCAATACCGAGGGAGAGGGGAGAGACGTCGAGG 64585 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || | | || ||| || ||| ||| | ||| ||||| || ||||| | |||| Sbjct 64586 AGAAGTAGATCCTGAGTCTTCTCAGAAGTGTCACCGGATAGAATCGCAGCTTGGACAGCA 64645 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || |||||||| ||||| || |||| | | || | | |||||||| || Sbjct 64646 GCACCGTAGGCAACAGCCTCATCGGGGTTAATGCTCTTGTTGGGCTCCTTACCATTAAAG 64705 Query 517670 AAATTTGA-AAGAAGTTGTC-TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 || | || | || ||| | ||| ||||||||||| ||| || || || | || | Sbjct 64706 AAGTCGGAGACGAGCTTGACGATAC--GAGGAATACGAGTTGAACCGCCGACAAGGACGA 64763 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 |||| ||||| | | ||||| | || ||||| | || || || || || || | Sbjct 64764 TTTCGTGCACATTGGCCTTATCAATCTTGGAATCGCGAAGGACCTTCTCGACAGGATCGA 64823 Query 517788 GACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTG 517843 || ||| | || | |||| || ||||| ||||| || | ||||| |||| Sbjct 64824 GA-GTGCTACGGAAAAGGTCTTGGCAGAGTTCCTCGAAACGGGCACGTGTAAGGGAAGTG 64882 Query 517844 ACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902 || || ||||| || || |||| ||||| | ||| |||| || |||| | ||| Sbjct 64883 ----TAGAAGTCAATACCCTCATACAAGGAATCGATTTCGATCGAGGTCTGAGCGGCAGA 64938 Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGT 517935 ||| | | ||| || |||||||| || || || Sbjct 64939 AGACAAAGTACGCTTGGCACGTTCGCAAGCGGT 64971 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 518599 || || || || |||| | || || ||||| || || ||| | ||| || || || Sbjct 65742 GGGTTCATCGCGACTTGGTTCTTTGCGGCATCACCGATAAGACGCTCTCCGTCGGTGAAG 65801 Query 518600 GAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCA 518659 | ||||| || || || || || |||||||| ||||| ||||||||||||||| | | Sbjct 65802 GCGACATAGGAAGGCGTCGTTCGGTTACCTTGGTCATTGGCAATAATTTCAACTCGATCG 65861 Query 518660 TTTTGCCATACACCTACACAACT 518682 |||||||| ||||| ||||| || Sbjct 65862 TTTTGCCACACACCGACACACCT 65884 >seq186 Length=69704 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| || || || ||||| || |||||||| || | | | |||| Sbjct 31218 TTCTTGTCAAGACCATAGGCCAATGCGGCAGCCGTAGGTTCATTGATGACACGAAGAACA 31277 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | |||||||||||| || || ||||| |||||||| | ||| | || || || || Sbjct 31278 TCAAGACCAGCAATCTGACCAGCGTCTTTCGTGGCTTGACGTTGGGCGTCATTGAAGTAG 31337 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || ||||| || Sbjct 31338 GCAGGGACCGTGATAACAGC 31357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780725584953406