Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1072 105 4e-18 seq250 98.7 6e-16 >seq1072 Length=303801 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | ||| |||| || ||||| || ||||| || Sbjct 211298 TCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAG 211357 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||||||| || || | || | |||||||| || ||||| || ||| Sbjct 211358 ATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTG 211417 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | || || ||||| |||||||| ||||| ||| Sbjct 211418 TCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACA 211477 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 211478 AAGATTTGCAT 211488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || || || ||||| | || |||| |||| ||| || || ||||| Sbjct 211070 TCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 211129 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| ||||| |||| | || |||||||| || ||| || || Sbjct 211130 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTG 211189 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 211190 TCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACG 211249 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 211250 AAGATCTGCAT 211260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || |||| |||| ||| || || ||||| Sbjct 210842 TCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 210901 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 210902 ATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTAC--AT 210959 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | |||||| || | || || || ||||| ||||| ||||| Sbjct 210960 --TGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTT 211017 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 211018 GACGAAGATCTGCATA 211033 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||| | |||| ||| ||||||||||| ||||| |||||| |||| |||| || ||||| Sbjct 211513 GTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCGACCATCTTCGAGCTG 211572 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 || || |||||||| || ||||| ||||| Sbjct 211573 CTTCCCCGCAAATATAAGACGTTGTTGGTC 211602 >seq250 Length=164446 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || || ||||| |||||||| | || |||| || ||||| ||||| ||||| Sbjct 133676 TTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAA 133617 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| ||||| | || | |||||||| || |||||| || || Sbjct 133616 GATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACATT 133557 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || || | ||| ||||| ||||| || | |||||| || Sbjct 133556 GTCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 133497 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 133496 AAAGATCTGCAT 133485 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| ||||| | || |||| |||| ||| ||||| ||||| Sbjct 133903 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 133844 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || ||||| | || | || || ||||| |||||| ||||| || Sbjct 133843 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGAC--AT 133786 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | ||| || || | || || || ||||| || | ||||| Sbjct 133785 --TGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGGTCAATGTCTT 133728 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 133727 CACAAAGATCTGCAT 133713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625880923128