Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq482 132 5e-26 seq109 129 7e-25 seq338 87.8 2e-12 >seq482 Length=177074 Score = 132 bits (146), Expect = 5e-26 Identities = 366/558 (66%), Gaps = 5/558 (1%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || ||||| ||||| || || |||| || || | || || ||| | |||| Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||||||||||| || | || ||||||||||| || ||||| || || |||||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || || || || || || || | ||| ||| || || | || || || | | Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 124294 Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 | |||||||| || ||||| || || || || | || || ||||| ||||| | | Sbjct 124295 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 124354 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 || ||||| || | || ||| || || |||| ||| || | | | ||| Sbjct 124355 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 124414 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||||| ||||| || || || || || ||||| | | || || | | Sbjct 124415 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 124474 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 || ||||| | |||| | || | || |||||| || || || || ||| || | Sbjct 124475 CTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGG 124534 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCC 19435 |||| ||||| | || || | || ||||| || || | ||||| |||| Sbjct 124535 CAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCC 124594 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | || || ||| | || | || | ||||| ||||| || || || ||||||| Sbjct 124595 AGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTT 124654 Query 19496 TTTTATACATGTTCCATA 19513 | || ||||| | ||||| Sbjct 124655 TCTTGTACATCTGCCATA 124672 >seq109 Length=35798 Score = 129 bits (142), Expect = 7e-25 Identities = 361/552 (65%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || ||| | ||| || || | || || | |||||| |||||||| || Sbjct 2880 ACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAATGTCAA 2939 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| ||||||| ||||| ||| || | ||| ||||| | ||||| || |||| || || Sbjct 2940 ACCCGGCATCAATCCTCGTTTCTTCATCCAAAATATGCAGGCAAACGACGCAGAGAAAAA 2999 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || ||||| | |||||||| || || | | ||| || || | | ||||| || Sbjct 3000 AATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTATTATCTTG 3059 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | || ||||| | || || | || | || || || || || ||||| || Sbjct 3060 AATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCAATAGAGTT 3119 Query 19200 AAATAGATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 |||| |||| |||||| || || | || ||||| | || | ||| ||| Sbjct 3120 GAATA---ACATCGAACGCTCTGGTGCATTTCGAATATATGTTTGAATAAGCAAAGAGTA 3176 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||| ||||||||||| || || ||||| || || || ||||| | || || | Sbjct 3177 GGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCGCCTCCGG 3236 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 | ||||| ||| | |||| | || ||| || || || || ||||| || Sbjct 3237 CACCTGTATTTCGTTGGAAAAATGACAAATCAGATTCTCGTTTACAATACCATCCGACGC 3296 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATT 19433 ||||| || || | || | || || ||| |||| | | | | | |||| Sbjct 3297 AGCAAAGAACGCCAGGACGCGAGAAACGAAGAATTTCTCATTAGCGTTGAGTTTGTTATT 3356 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| || || || || || || | ||| | ||||| |||||| || || | | || Sbjct 3357 CCAGTCGTTGATGTCATTCGAAAGATCAATCTCTTCCGATGTCCAGAATGACGATTGAGC 3416 Query 19494 TTTTTTATACAT 19505 |||||| ||||| Sbjct 3417 TTTTTTGTACAT 3428 >seq338 Length=27447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 48212 CATA-AATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269 |||| || | |||||| ||||| || || ||| || ||||| | || | ||||| || Sbjct 2998 CATACAACAGATCTGGAATCCATAGTGC-ATAGAACAAATCACGAGCACGAAGTTCCTCC 3056 Query 48270 TTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 |||||| ||| | ||||| | | | || | ||||||| |||||| ||||| | Sbjct 3057 TTGCCATGGTTCTTGCGCAAGTTGACTATA-TCGAAAATATCAGGATGCCAAGGTTCAAC 3115 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || || || || ||||||||||||||||| |||||||| | ||||| || ||| Sbjct 3116 GTAGATAGCGATAGACCCTGGTCGTTTATTACCCCCTTGATCAACATATCGTGCTGTAGC 3175 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 | ||| || | | |||||| | ||| ||||| || ||| || || || | ||||| Sbjct 3176 ATCATATACACGAAGCATTGGTATAATGCCATTAGAATAACCGTTTGTACCGGCGATATA 3235 Query 48449 A 48449 | Sbjct 3236 A 3236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095091571640