Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq250 118 8e-22 seq1072 104 2e-17 >seq250 Length=164446 Score = 118 bits (130), Expect = 8e-22 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 48557 CACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| ||| || || |||||| ||||| || || ||||| || | ||| | || | Sbjct 133923 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 133864 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 |||||||||| || ||||| |||| |||||||| || | |||| ||| || ||||| Sbjct 133863 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 133804 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 ||||||| || ||| | | || || || | ||| ||||| | || ||||| | Sbjct 133803 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCT 133744 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| || || ||||| ||||||||| Sbjct 133743 TTCCGGTCAATGTCTTCACAAAGATCTGCATC 133712 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| ||||| ||||| || ||| | || | || || | |||||| || ||||| Sbjct 133675 TCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAG 133616 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || ||||| || | || | |||||||| || ||||||| || ||| Sbjct 133615 ATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACATTG 133556 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || |||| ||||||||||| || || || ||||| |||||||| || ||| Sbjct 133555 TCAATGGTATCAGACGACTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACA 133496 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 133495 AAGATCTGCAT 133485 >seq1072 Length=303801 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| || || | ||| | || ||||||||||| || ||||| Sbjct 210841 CTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 210900 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | |||| |||||||||||| ||||| |||||| Sbjct 210901 AATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATT 210960 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||||| |||||||| ||||| || | || || || Sbjct 210961 GTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGAC 211020 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 211021 GAAGATCTGCAT 211032 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||||||||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 211069 CTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 211128 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || ||||| || | |||| || |||||||| || || || ||| Sbjct 211129 AATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATT 211188 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | || ||||| |||||||| | || || || Sbjct 211189 GTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGAC 211248 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 211249 GAAGATCTGCAT 211260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928542137173