Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02]
1,951 sequences; 39,922,873 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq51 102 1e-16
seq338 82.4 9e-11
>seq51
Length=295103
Score = 102 bits (112), Expect = 1e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
||||| | ||| ||||||||||||| | || || ||||| || || ||||| ||||
Sbjct 220175 CCACAACATATGATCATGCGGGTCGCTGTTGGGATACACGGAGACGATATTGAGCATGTC 220234
Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
||| | |||||| || |||||| | | ||| |||| ||| || || || || |||||
Sbjct 220235 TTGCAAACATACAACCTCATGTCCGAGCGATAT-TTCACTCATGCCACTCCCACTCTCTT 220293
Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
|||||| ||||| || || || |||||| ||||||||| | || || || ||
Sbjct 220294 CAATGCCGGTACCCCTTCGCCTCAAATGTCCTCATGCTTCCTTGTTTGCATGAAAGATGA 220353
Query 75391 CTCAATCAACGGTATCTA 75408
|| ||| | ||||||||
Sbjct 220354 TTCTATCGAAGGTATCTA 220371
>seq338
Length=27447
Score = 82.4 bits (90), Expect = 9e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 75221 ATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACA 75280
||||||||||| || || || || || || || || || ||||| ||| | ||||
Sbjct 3560 ATGTTCATGCGTGTGGCTATTGGAATACATGGAGATGATATTGAACGTGTTCTACAGACC 3501
Query 75281 TACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGT 75340
|| | ||||| | | | |||||||| || ||||||||||| |||||||| ||
Sbjct 3500 TATAATCTAATGTCGAACCGATTCTTCATTCATGCGACACCAACCCTTTTCAATGCCGGG 3441
Query 75341 ACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAAC 75400
|| | | | || ||||| ||||||| | || ||| ||||| ||||| ||| |
Sbjct 3440 ACCACTTCAGCTCAAATGTCGTCTTGCTTCTTGATGTCCATGAAGGACGACTCCATCGAT 3381
Query 75401 GGTATCTATG 75410
||||| ||||
Sbjct 3380 GGTATTTATG 3371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596555051158880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |