Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq482 141 1e-28 seq109 122 1e-22 seq250 100 4e-16 seq1072 93.3 6e-14 >seq482 Length=177074 Score = 141 bits (156), Expect = 1e-28 Identities = 364/551 (66%), Gaps = 7/551 (1%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 |||||| ||||| || |||||||||||||||| | || | ||||| | | |||| Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | || |||| ||| || || || ||||| | |||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA 18335 || ||||| || ||| ||||| || | ||||| || |||||| || || || ||| Sbjct 124236 GATTCCCTCGACAGCA-GCGAATGCCACCAATCTCTCTGCAAAAGTG-CTTCGTTTGTCA 124293 Query 18336 G-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||||||| | ||||| || ||| || |||||||| | ||||| || Sbjct 124294 GATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCG 124353 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | || | || | || || ||| || | || || ||||| | || ||| || Sbjct 124354 TCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAA 124413 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||||||||| | | ||||||| ||| || || | |||||| | | ||||| | Sbjct 124414 GTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCT 124473 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| | ||| | |||| | || | || ||| || || || |||||||||| | Sbjct 124474 GCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 124533 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTC 18631 || || ||||| | || | | |||||||| || | || || | | | |||| Sbjct 124534 GCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTC 124593 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || || | | ||| | | || |||| |||||||| ||||| || |||| ||| || Sbjct 124594 CAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCT 124653 Query 18692 TGTTTGTACAT 18702 | |||||||| Sbjct 124654 TTCTTGTACAT 124664 >seq109 Length=35798 Score = 122 bits (134), Expect = 1e-22 Identities = 367/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 18152 AATAA-ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAA 18210 ||||| ||| ||||| || || || | |||||||| | | || | ||| || ||| Sbjct 2874 AATAAGACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAA 2933 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACT-AG 18269 || || || ||||| | |||| ||| || | ||||||||| | || |||| || || Sbjct 2934 TGTCAAACCCGGCATCAATCCTCGTTTCTTCATCCAAAATATGCAGGC-AAACGACGCAG 2992 Query 18270 AAAAGAATATACCCTCAA-CGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 | || || || || || | ||| || || |||| || | || |||||| || ||||| Sbjct 2993 AGAAAAAAATGCCTTCGATCGCT-GCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTA 3051 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 || | ||||| | | ||||||| | ||| || ||||| ||| | || Sbjct 3052 TTATCTTGAATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCA 3111 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTT--ATATAAGTGTCGATTAACA 18446 |||| || || || |||| || ||| ||| ||||| || | || | || Sbjct 3112 ATAGAGTTGAATAA--CATCGAACGCTCTGGTGCATTTCGAATATATGTTTGAATAAGCA 3169 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 |||| || |||||||||| || | ||||| ||||| |||| ||| || | | | Sbjct 3170 AAGAGTAGGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCG 3229 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 |||| || || || ||| | |||| | || |||||| || || ||||| | Sbjct 3230 CCTCCGGCACCTGTATTTCGTTGGAAAAATGACAAATCAGATTCTCGTTTACAATACCAT 3289 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 | | | || || || |||| || || ||| ||| |||||| | ||||| | Sbjct 3290 CCGACGCAGCAAAGAACGCCAGGACGCGAGAAACGAAGAATTTCTCATTAGCGTTGAGTT 3349 Query 18627 TGTT---CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 |||| ||| || | || || || || ||||||| |||||||||||||| || || | Sbjct 3350 TGTTATTCCAGTCGTTGATGTCATTCGAAAGATCAATCTCTTCCGATGTCCAGAATGACG 3409 Query 18684 ATTCGGCCTGTTTGTACATT 18703 ||| || | |||||||||| Sbjct 3410 ATTGAGCTTTTTTGTACATT 3429 >seq250 Length=164446 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| ||||| || || || || || || || || Sbjct 133484 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTC 133543 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| || || || ||||| || || || ||||| || || Sbjct 133544 TGATACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 133603 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | ||| || |||||||| |||||| | | ||| | || |||||||| Sbjct 133604 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 133663 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 ||| ||||| |||| |||||| Sbjct 133664 TATCCAAAAAGAATCGACTCTTCAT 133688 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| ||||| || || || | || ||||| |||| Sbjct 133713 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 133772 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 133773 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 133832 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||| | || ||| | || | || || ||||| Sbjct 133833 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 133892 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 133893 ATTCAGAAAGAGTCTACCCTTCAT 133916 >seq1072 Length=303801 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || ||||| || || || || ||||| ||| Sbjct 211488 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 211429 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 211428 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 211369 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || | || | ||||| ||||||||||||||| Sbjct 211368 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGAT 211333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731854151471600