Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq35 93.3 5e-13 >seq35 Length=211330 Score = 93.3 bits (102), Expect = 5e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| ||| ||| ||| ||| |||||||||||||| || | ||||||||| Sbjct 160463 GCCTTTGAGTAATCGGACACCCGCTTCTCAAAAAAGTTGGTCTTCCCTTGAAGCGAGATC 160404 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | || ||||| ||| | | ||||| | || Sbjct 160403 ATGTCCATAAAGTCGAAGGGGTTCGTCGAGTTGTACAACTTCTTGTTGCCGAGAGCGACG 160344 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || || || ||||| || |||||||| || || ||||| | |||||||||||||| Sbjct 160343 AGTAGTCGATCGGCAACGAACTCGATATATTGACACATCAATGTCGCGTTCATGCCGAT 160285 Score = 91.5 bits (100), Expect = 2e-12 Identities = 199/293 (68%), Gaps = 5/293 (2%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| ||| || || |||||||| | ||||| || || | ||| ||||| | | Sbjct 160103 TATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATC 160044 Query 869232 CGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 | |||||||| | ||||||||||| ||| ||| ||| ||||| || ||||| || || Sbjct 160043 CACGCTTCTTCATCCAAAAGATGGACGC-GAAGGAGCCAGAGAAGAAAATGCCTTCAACA 159985 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTC 869350 || |||||| | | ||| |||||| | || ||| | || | ||||||| | Sbjct 159984 GCAGCAAAGGCTACGAGACGCTCGCCGAA--AACCGA-GTGTTCGTCACTGATCCAGCGC 159928 Query 869351 ATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGG 869410 | ||||| |||||||| | | | | || | || ||||| || ||| ||| Sbjct 159927 AGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAA 159868 Query 869411 TCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||| | ||||| |||| || |||||||| || || || || ||||| Sbjct 159867 TCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTC 159815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106979091803467