Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq641 176 3e-38 seq186 91.5 1e-12 seq112 86.0 5e-11 >seq641 Length=219978 Score = 176 bits (194), Expect = 3e-38 Identities = 460/693 (66%), Gaps = 14/693 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||||||||||| ||||| | ||||| |||||||| | || || ||||| || ||| Sbjct 64286 TTATCAGCGGCAGAAACATTCAAGATACCGTTGGCATCGATGTCGAAGGTGACCTCGATT 64345 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | ||||||||||||| || | | ||| | || || || Sbjct 64346 TGAGGTACACCACGGGGAGCAGGTGGGATACCAGAAAGCTCGAATTTCCCAAGGAGGTTG 64405 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || |||||| |||||||||||||| | |||||| || ||| ||| ||| Sbjct 64406 TTGTCCTTAGTGCGAGCACGTTCACCCTCGAAGACTTGGATGAGCACACCAGGTTGGTTA 64465 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || | ||||||| || | || || ||| || | || ||||| | | || Sbjct 64466 TCGGCGTAAGTTGAGAAGGTTTCAGACTTCTTAGTCGGGACAGTGGTGTTACGCTTGATG 64525 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | |||||| | ||||||||| ||||| | ||| || || || |||| ||| || | Sbjct 64526 AGTGCGGTCATCACACCACCAGCAGTTTCAATACCGAGGGAGAGGGGAGAGACGTCGAGG 64585 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 || | | || ||| || ||| ||| | ||| ||||| || ||||| | |||| Sbjct 64586 AGAAGTAGATCCTGAGTCTTCTCAGAAGTGTCACCGGATAGAATCGCAGCTTGGACAGCA 64645 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || |||||||| ||||| || |||| | | || | | |||||||| || Sbjct 64646 GCACCGTAGGCAACAGCCTCATCGGGGTTAATGCTCTTGTTGGGCTCCTTACCATTAAAG 64705 Query 281837 AAATTTGA-AAGAAGTTGTC-TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | || | || ||| | ||| ||||||||||| ||| || || || | || | Sbjct 64706 AAGTCGGAGACGAGCTTGACGATAC--GAGGAATACGAGTTGAACCGCCGACAAGGACGA 64763 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 |||| ||||| | | ||||| | || ||||| | || || || || || || | Sbjct 64764 TTTCGTGCACATTGGCCTTATCAATCTTGGAATCGCGAAGGACCTTCTCGACAGGATCGA 64823 Query 281955 GACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTG 282010 || ||| | || | |||| || ||||| ||||| || | ||||| |||| Sbjct 64824 GA-GTGCTACGGAAAAGGTCTTGGCAGAGTTCCTCGAAACGGGCACGTGTAAGGGAAGTG 64882 Query 282011 ACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 || || ||||| || || |||| ||||| | ||| |||| || |||| | ||| Sbjct 64883 ----TAGAAGTCAATACCCTCATACAAGGAATCGATTTCGATCGAGGTCTGAGCGGCAGA 64938 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGT 282102 ||| | | ||| || |||||||| || || || Sbjct 64939 AGACAAAGTACGCTTGGCACGTTCGCAAGCGGT 64971 Score = 87.8 bits (96), Expect = 1e-11 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 |||||| | |||||| |||||||| |||| ||| ||||| || || ||| |||| | Sbjct 178994 CAAAAGGGAAACATCGAAAGTTCCACCTCCCAAATCGAAAATGAGGACGTTCTTTTCAGT 178935 Query 282325 GTCTTGGTTTTTA-TCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | ||| || || ||||| || |||| ||| ||||||||||| ||||| || || | Sbjct 178934 TT-TTGATTGACGGTCGAGACCGTAAGCAATAGCGGCAGCAGTTGGCTCATTGATGATAC 178876 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 | ||||| || ||||| || || || ||||| || || | || ||||| | Sbjct 178875 GGAGAACATCGAGGCCAGCGATAGCACCAGCGTCTTTTGTTGCCAAACGCTGGGAATCAT 178816 Query 282444 TAAAATATGCAGGAACA 282460 |||| || ||||| ||| Sbjct 178815 TAAAGTAGGCAGGTACA 178799 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||| | || || ||||| || || ||| | ||| || || || | ||||| || | Sbjct 65755 CTTGGTTCTTTGCGGCATCACCGATAAGACGCTCTCCGTCGGTGAAGGCGACATAGGAAG 65814 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || || |||||||| ||||| ||||||||||||||| | | |||||||| |||| Sbjct 65815 GCGTCGTTCGGTTACCTTGGTCATTGGCAATAATTTCAACTCGATCGTTTTGCCACACAC 65874 Query 282840 CTACACAACT 282849 | ||||| || Sbjct 65875 CGACACACCT 65884 >seq186 Length=69704 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| || || || ||||| || |||||||| || | | | |||| Sbjct 31218 TTCTTGTCAAGACCATAGGCCAATGCGGCAGCCGTAGGTTCATTGATGACACGAAGAACA 31277 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | |||||||||||| || || ||||| |||||||| | ||| | || || || || Sbjct 31278 TCAAGACCAGCAATCTGACCAGCGTCTTTCGTGGCTTGACGTTGGGCGTCATTGAAGTAG 31337 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || ||||| || Sbjct 31338 GCAGGGACCGTGATAACAGC 31357 >seq112 Length=245430 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 |||||||| || ||| | |||| || |||||||||||||| || ||| | ||||| || Sbjct 199015 GGTAAAGAGGGCCGTTTGCGAGGTAACTTGATGGGAAAGCGGGTTGATTTTTCTGCTCGA 198956 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||||| ||| | | | ||||||| || ||||||| || ||| Sbjct 198955 ACTGTGATTACTGGTGATCCCAATCTGGAATTGGATGAAGTCGGCGTTCCTCGCAGTATC 198896 Query 432408 GC 432409 || Sbjct 198895 GC 198894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740534614144926