Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq250 188 1e-42 seq31 87.8 4e-12 >seq250 Length=164446 Score = 188 bits (208), Expect = 1e-42 Identities = 172/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | || ||||| |||||||| || ||||||||||| || ||| | | || Sbjct 133700 ACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCC 133641 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||| || |||||||||||||| || | |||||| || ||||| || || ||||| Sbjct 133640 ATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTT 133581 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||||||||| || ||||| ||||| |||||| | || || ||||| || || Sbjct 133580 ATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCCACCTCCAAGGTGAT 133521 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| ||||| ||||||||| Sbjct 133520 GGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 133484 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| |||||||| || ||||| ||||| || | | ||| || || | || Sbjct 133915 TGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGC 133856 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| | | ||||| || ||||| || ||||| || || ||||||||| Sbjct 133855 TTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTT 133796 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || ||| || || || || | ||| |||||||| || ||| Sbjct 133795 GCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGGTC 133736 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 133735 AATGTCTTCACAAAGATCTGCAT 133713 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | |||||||||||||| ||||| || || || ||||| ||| | | ||| Sbjct 133472 ACGAAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACC 133413 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 || || ||||| ||||| |||||||| | || |||||||| ||||| || Sbjct 133412 ATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGAAT 133362 >seq31 Length=238504 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| |||||||| || || ||||||||||| || || |||||| ||| | | || Sbjct 176099 ACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCC 176040 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 || || ||||||||||| || || || |||| |||||||| || || |||| Sbjct 176039 ATCCTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGGGGGAATTC 175987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981802657081389