Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1072 107 2e-18 seq250 87.8 2e-12 >seq1072 Length=303801 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | |||| ||| | ||||| | ||||||||| Sbjct 210836 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCA-TCCTCCAACTGCTTGCC 210894 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 210895 AGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 210954 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || || | || | || || || || || || Sbjct 210955 TACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGT 211014 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 211015 CTTGACGAAGATCTGCAT 211032 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| ||||||||||| | |||| ||| | ||||| | |||||||| Sbjct 211063 GGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCA-TCCTCCAACTGCTTGC 211121 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || ||||||| || || ||||| || || || ||||||||||| ||| || || Sbjct 211122 CAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCT 211181 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | |||| || || || || || | Sbjct 211182 TAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTG 211241 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 211242 TCTTGACGAAGATCTGCATGCCT 211264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || ||||||||||||| Sbjct 211291 GGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCA-TCTTCGAGCTGCTTGC 211349 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || || || |||||||| ||||| ||||| || ||||| || Sbjct 211350 CGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTGGCCT 211409 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | |||| |||||||| || || | Sbjct 211410 TCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGG 211469 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || || |||||| || Sbjct 211470 TCTTAACAAAGATTTGCATGCCT 211492 >seq250 Length=164446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || || || || | ||| ||| | ||||| | || Sbjct 133916 ATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCA-TCCTCCAACT 133858 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | ||||| ||||||||||| |||||||| ||||| |||| Sbjct 133857 GCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCT 133798 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | || | ||||| | | ||| || || | |||| || || |||| Sbjct 133797 TTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTCCGG 133738 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 133737 TCAATGTCTTCACAAAGATCTGCAT 133713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409010575240