Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq482 181 8e-41 seq109 174 1e-38 seq35 141 7e-29 >seq482 Length=177074 Score = 181 bits (200), Expect = 8e-41 Identities = 381/559 (68%), Gaps = 12/559 (2%) Strand=Plus/Minus Query 43731 TATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGA 43790 ||||||| |||||||| |||||| | || || || ||||| | ||||| |||| | | Sbjct 124672 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 124613 Query 43791 CTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTT 43847 || | || | | | |||| | |||||| | || ||||| || | Sbjct 124612 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 124553 Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGT 43907 || | || || ||||| || ||||| || || || |||||| || | || | Sbjct 124552 ACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 124493 Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967 || | | ||||| ||| | | || || || | ||||||||||| ||||| || | Sbjct 124492 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 124433 Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA-C 44026 |||| ||||||| |||| ||| ||| || || ||||| ||| |||| ||| | | Sbjct 124432 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATCTTAATC 124373 Query 44027 GAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAG 44084 | |||| || | || | || ||||||||| |||| ||| || || | ||||| | Sbjct 124372 AACGCGCAT--ATCTCTTCGACGCAATAGAAACAATACCGTGC-ATCAAGCGCAAAGCCG 124316 Query 44085 ACTGGGCCCTTAAATGGATAAATT-CAAATGATTC--TTTTGGAGAACGACTTGTCGCGT 44141 |||||||||| ||||||||| | |||| || | ||||| ||| || | || || | Sbjct 124315 ACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGCAT 124256 Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201 | || | ||| || || || || ||||| || ||||| || |||| || |||||||||| Sbjct 124255 TCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGA 124196 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261 | || || |||||||||| | || | |||||| ||| | || || || |||||||| | Sbjct 124195 AGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAAGGTT 124136 Query 44262 TACATTGCGATTTTGCTTG 44280 ||||| |||||| || || Sbjct 124135 TACATACCGATTTCGCGTG 124117 >seq109 Length=35798 Score = 174 bits (192), Expect = 1e-38 Identities = 380/564 (67%), Gaps = 20/564 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| ||||||||||||||| || ||||||| |||||| | ||||| ||||| | Sbjct 3437 ATTTGGTCAATGTACAAAAAAGCTCAATCGTCATTCTGGACATCGGAAGAGATTGATCTT 3378 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAA-------GAAAAACATTTTAT 43842 | || ||| | | |||| || | || | ||| || ||| || | Sbjct 3377 TCGAATGACATCAACGACTGGA----ATAACAAACTCAACGCTAATGAGAAATTCTTCGT 3322 Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 ||| || ||||||| ||||||||| || || || || || || ||| || || | Sbjct 3321 TTCTCGCGTCCTGGCGTTCTTTGCTGCGTCGGATGGTATTGTAAACGAGAATCTGATTTG 3262 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 || ||| | | ||| | || | || || || || ||||| ||||| || || ||| Sbjct 3261 TCATTTTTCCAACGAAATACAGGTGCCGGAGGCGCGGTGTTTCTATGGTTTCCAGATTAT 3202 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022 || || ||||||||||| |||| ||| | | || || | || || || | ||| Sbjct 3201 GATGGAGAATATTCATTCTGAAACCTACTCTTTGCTTATTCAAACATATATTCGAAATG- 3143 Query 44023 GCACGAGAAGCATCGAT--TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079 ||| ||| ||||| | || || | || ||||| | || ||| || || || Sbjct 3142 -CACCAGAGCGTTCGATGTTATTCAACTCTATTGAAACTATTCCGTGC-ATCAATAGAAA 3085 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTGT 44136 |||| | ||||| ||| | ||||| | ||| | | |||||| ||| || | || Sbjct 3084 AGCAAAATGGGCGCTTCAGTGGATTCAAGATAATAAATTCACTTTTGCAGAGCGTTTGGT 3025 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || ||||||| | ||||||||||| || || | |||||||| |||||||||| | Sbjct 3024 AGCATTTGCAGCGATCGAAGGCATTTTTTTCTCTGCGTCGTTTGCCTGCATATTTTGGAT 2965 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||||| |||||||| || ||||| ||||||||||| | || || | ||||| Sbjct 2964 GAAGAAACGAGGATTGATGCCGGGTTTGACATTTTCAAATGAACTCATTAGCTGCGATGA 2905 Query 44257 AGGCTTACATTGCGATTTTGCTTG 44280 ||| | ||| ||| ||||| || Sbjct 2904 AGGAATGCATACCGAATTTGCCTG 2881 >seq35 Length=211330 Score = 141 bits (156), Expect = 7e-29 Identities = 384/579 (66%), Gaps = 29/579 (5%) Strand=Plus/Plus Query 43720 ATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGA 43779 |||| || | ||||||||||||||||| || || |||| || || ||||| || ||||| Sbjct 159551 ATAT-ATCAGATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGA 159609 Query 43780 AGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACA--- 43836 | ||||| | |||||| | ||| || || | | |||| | ||| ||| Sbjct 159610 GATGGATTTATCAAAAGACCTT---CAT--GACTGGA--ACAACCGCCTGAATGACAGCG 159662 Query 43837 -----TTTTATATCTTTGGTTT--TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || | |||| || | | ||||| ||||| || || || || ||||| | Sbjct 159663 AACGATTCTTCATCTCCCGTGTCCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACG 159722 Query 43890 AAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 | ||| | | || || || | ||||| || | | || || || || || || | Sbjct 159723 AGAATCTTCTCGAACGCTTCTCGAACGAAGTACAGGTCGCTGAGGCGCGTTGCTTCTACG 159782 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009 |||| || ||| || || || ||||| || || | ||| |||||| || || || | Sbjct 159783 GGTTCCAGATTATGATGGAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACAT 159842 Query 44010 ACATCAAAGA---TGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 |||||||||| || | ||| || || || || |||| || || || | ||| Sbjct 159843 ACATCAAAGACCCTGTCGAACGTGATT--TCCTTT--TTGATGCTATCGAGACTATTCCT 159898 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTT 44122 || || | || || || ||||| || ||||| | | | | || ||| Sbjct 159899 TGCATCAAGCGCAAGGCCGAGTGGGCTCTGCGCTGGATCAGTGACGAACACTCGGTTTTC 159958 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || || || || || ||||| | ||| |||||||||||||| || || || || ||| Sbjct 159959 GGCGAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCG 160018 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| |||||| | ||||| || || || |||||||| ||| |||| ||||| ||| | Sbjct 160019 TCCATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTC 160078 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||||||||| || | ||| ||| || || ||| Sbjct 160079 ATCAGTCGTGATGAGGGTATGCATACCGACTTCGCCTGC 160117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446549365755