Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02]
1,951 sequences; 39,922,873 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq482 181 8e-41
seq109 174 1e-38
seq35 141 7e-29
>seq482
Length=177074
Score = 181 bits (200), Expect = 8e-41
Identities = 381/559 (68%), Gaps = 12/559 (2%)
Strand=Plus/Minus
Query 43731 TATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGA 43790
||||||| |||||||| |||||| | || || || ||||| | ||||| |||| | |
Sbjct 124672 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 124613
Query 43791 CTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTT 43847
|| | || | | | |||| | |||||| | || ||||| || |
Sbjct 124612 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 124553
Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGT 43907
|| | || || ||||| || ||||| || || || |||||| || | || |
Sbjct 124552 ACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 124493
Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967
|| | | ||||| ||| | | || || || | ||||||||||| ||||| || |
Sbjct 124492 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 124433
Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA-C 44026
|||| ||||||| |||| ||| ||| || || ||||| ||| |||| ||| | |
Sbjct 124432 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATCTTAATC 124373
Query 44027 GAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAG 44084
| |||| || | || | || ||||||||| |||| ||| || || | ||||| |
Sbjct 124372 AACGCGCAT--ATCTCTTCGACGCAATAGAAACAATACCGTGC-ATCAAGCGCAAAGCCG 124316
Query 44085 ACTGGGCCCTTAAATGGATAAATT-CAAATGATTC--TTTTGGAGAACGACTTGTCGCGT 44141
|||||||||| ||||||||| | |||| || | ||||| ||| || | || || |
Sbjct 124315 ACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGCAT 124256
Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201
| || | ||| || || || || ||||| || ||||| || |||| || ||||||||||
Sbjct 124255 TCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGA 124196
Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261
| || || |||||||||| | || | |||||| ||| | || || || |||||||| |
Sbjct 124195 AGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAAGGTT 124136
Query 44262 TACATTGCGATTTTGCTTG 44280
||||| |||||| || ||
Sbjct 124135 TACATACCGATTTCGCGTG 124117
>seq109
Length=35798
Score = 174 bits (192), Expect = 1e-38
Identities = 380/564 (67%), Gaps = 20/564 (4%)
Strand=Plus/Minus
Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789
|| ||| ||||||||||||||| || ||||||| |||||| | ||||| ||||| |
Sbjct 3437 ATTTGGTCAATGTACAAAAAAGCTCAATCGTCATTCTGGACATCGGAAGAGATTGATCTT 3378
Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAA-------GAAAAACATTTTAT 43842
| || ||| | | |||| || | || | ||| || ||| || |
Sbjct 3377 TCGAATGACATCAACGACTGGA----ATAACAAACTCAACGCTAATGAGAAATTCTTCGT 3322
Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902
||| || ||||||| ||||||||| || || || || || || ||| || || |
Sbjct 3321 TTCTCGCGTCCTGGCGTTCTTTGCTGCGTCGGATGGTATTGTAAACGAGAATCTGATTTG 3262
Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|| ||| | | ||| | || | || || || || ||||| ||||| || || |||
Sbjct 3261 TCATTTTTCCAACGAAATACAGGTGCCGGAGGCGCGGTGTTTCTATGGTTTCCAGATTAT 3202
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022
|| || ||||||||||| |||| ||| | | || || | || || || | |||
Sbjct 3201 GATGGAGAATATTCATTCTGAAACCTACTCTTTGCTTATTCAAACATATATTCGAAATG- 3143
Query 44023 GCACGAGAAGCATCGAT--TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079
||| ||| ||||| | || || | || ||||| | || ||| || || ||
Sbjct 3142 -CACCAGAGCGTTCGATGTTATTCAACTCTATTGAAACTATTCCGTGC-ATCAATAGAAA 3085
Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTGT 44136
|||| | ||||| ||| | ||||| | ||| | | |||||| ||| || | ||
Sbjct 3084 AGCAAAATGGGCGCTTCAGTGGATTCAAGATAATAAATTCACTTTTGCAGAGCGTTTGGT 3025
Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196
|| ||||||| | ||||||||||| || || | |||||||| |||||||||| |
Sbjct 3024 AGCATTTGCAGCGATCGAAGGCATTTTTTTCTCTGCGTCGTTTGCCTGCATATTTTGGAT 2965
Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256
||||||||||| |||||||| || ||||| ||||||||||| | || || | |||||
Sbjct 2964 GAAGAAACGAGGATTGATGCCGGGTTTGACATTTTCAAATGAACTCATTAGCTGCGATGA 2905
Query 44257 AGGCTTACATTGCGATTTTGCTTG 44280
||| | ||| ||| ||||| ||
Sbjct 2904 AGGAATGCATACCGAATTTGCCTG 2881
>seq35
Length=211330
Score = 141 bits (156), Expect = 7e-29
Identities = 384/579 (66%), Gaps = 29/579 (5%)
Strand=Plus/Plus
Query 43720 ATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGA 43779
|||| || | ||||||||||||||||| || || |||| || || ||||| || |||||
Sbjct 159551 ATAT-ATCAGATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGA 159609
Query 43780 AGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACA--- 43836
| ||||| | |||||| | ||| || || | | |||| | ||| |||
Sbjct 159610 GATGGATTTATCAAAAGACCTT---CAT--GACTGGA--ACAACCGCCTGAATGACAGCG 159662
Query 43837 -----TTTTATATCTTTGGTTT--TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889
|| | |||| || | | ||||| ||||| || || || || ||||| |
Sbjct 159663 AACGATTCTTCATCTCCCGTGTCCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACG 159722
Query 43890 AAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949
| ||| | | || || || | ||||| || | | || || || || || || |
Sbjct 159723 AGAATCTTCTCGAACGCTTCTCGAACGAAGTACAGGTCGCTGAGGCGCGTTGCTTCTACG 159782
Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009
|||| || ||| || || || ||||| || || | ||| |||||| || || || |
Sbjct 159783 GGTTCCAGATTATGATGGAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACAT 159842
Query 44010 ACATCAAAGA---TGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065
|||||||||| || | ||| || || || || |||| || || || | |||
Sbjct 159843 ACATCAAAGACCCTGTCGAACGTGATT--TCCTTT--TTGATGCTATCGAGACTATTCCT 159898
Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTT 44122
|| || | || || || ||||| || ||||| | | | | || |||
Sbjct 159899 TGCATCAAGCGCAAGGCCGAGTGGGCTCTGCGCTGGATCAGTGACGAACACTCGGTTTTC 159958
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| || || || || || ||||| | ||| |||||||||||||| || || || || |||
Sbjct 159959 GGCGAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCG 160018
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
|||| |||||| | ||||| || || || |||||||| ||| |||| ||||| ||| |
Sbjct 160019 TCCATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTC 160078
Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281
|| ||||||||||| || | ||| ||| || || |||
Sbjct 160079 ATCAGTCGTGATGAGGGTATGCATACCGACTTCGCCTGC 160117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397446549365755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |