Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq51 102 1e-16 seq338 82.4 1e-10 >seq51 Length=295103 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 |||||||| | ||| || || || || || | ||||||||| |||||| || || Sbjct 220371 TAGATACCTTCGATAGAATCATCTTTCATGCAAACAAGGAAGCATGAGGACATTTGAGGC 220312 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACAT 112005 || ||||| ||||||||||| || || || || ||| |||| ||| | | |||||| Sbjct 220311 GAAGGGGTACCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAA-ATATCGCTCGGACAT 220253 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || |||||| | ||||||| ||||| || || ||||| || || | |||||||| Sbjct 220252 GAGGTTGTATGTTTGCAAGACATGCTCAATATCGTCTCCGTGTATCCCAACAGCGACCCG 220193 Query 112066 CATGAACATGTACTGTGG 112083 ||||| ||| | ||||| Sbjct 220192 CATGATCATATGTTGTGG 220175 >seq338 Length=27447 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 |||| ||||| | ||| ||||| ||||| ||| || | ||||||| ||||| || | Sbjct 3371 CATAAATACCATCGATGGAGTCGTCCTTCATGGACATCAAGAAGCAAGACGACATTTGAG 3430 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACA 112004 | | || || |||||||| ||||||||||| || |||||||| | | | |||| Sbjct 3431 CTGAAGTGGTCCCGGCATTGAAAAGGGTTGGTGTCGCATGAATGAAGAATCGGTTCGACA 3490 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | | || |||| | ||| ||||| || || || || || || || || || | Sbjct 3491 TTAGATTATAGGTCTGTAGAACACGTTCAATATCATCTCCATGTATTCCAATAGCCACAC 3550 Query 112065 GCATGAACAT 112074 |||||||||| Sbjct 3551 GCATGAACAT 3560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016683869600