Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq250 197 4e-45 seq641 168 2e-36 seq1039 116 1e-20 seq109 100 9e-16 seq72 98.7 3e-15 seq1072 96.9 1e-14 seq102 87.8 5e-12 seq31 86.0 2e-11 >seq250 Length=164446 Score = 197 bits (218), Expect = 4e-45 Identities = 183/232 (79%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||||||||||||||| || |||||||| ||||||||||| Sbjct 133715 CATCCCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATC 133656 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || |||||||||||||| |||||||| || ||||| Sbjct 133655 CGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGG 133596 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || || || ||||| ||||| | |||||| | || Sbjct 133595 AGGGATACCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTC 133536 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || | || | ||||||||||| | || || ||||| ||||||||| Sbjct 133535 CACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 133484 Score = 172 bits (190), Expect = 2e-37 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||||||||| ||||||||||| ||||| ||||| ||||| | || || ||||| || | Sbjct 133920 CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCA 133861 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || |||||||||||||| | ||| || || || |||||||| |||||||| ||||||| Sbjct 133860 ACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAA 133801 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | ||||| | || || ||||| || | ||||||| Sbjct 133800 TCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACCTCAAGAGTGATCGTCTTTC 133741 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | ||| || ||||| |||||||| Sbjct 133740 CGGTCAATGTCTTCACAAAGATCTGCAT 133713 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||||||||| |||||||| || || ||||| || || || Sbjct 133487 CATTCCACCACGAAGACGAAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTC 133428 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || ||||| ||||| |||||||| | || || |||||||| Sbjct 133427 AGAAAGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGG 133368 Query 140627 AGGAAT 140632 |||||| Sbjct 133367 AGGAAT 133362 >seq641 Length=219978 Score = 168 bits (186), Expect = 2e-36 Identities = 470/707 (66%), Gaps = 18/707 (3%) Strand=Plus/Minus Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026 ||||| || | || || || |||||||| |||||| | || || ||| | | || ||| Sbjct 64983 CGTCGTCTCCGTACCGCTTGCGAACGTGCCAAGCGTACTTTGTCTTCTGCCGCTCAGACC 64924 Query 350027 TCTATTGAAATTGATTCTCTTGC-TGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 || || ||||| ||||| |||| ||| || | || |||| | || |||||||||| Sbjct 64923 TCGATCGAAATCGATTC-CTTGTATGAGGGTATTGACTTCTACACTTCCCTTACACGTGC 64865 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAG 350144 || || || ||| | || || ||||| | |||| | | |||||||| || || | Sbjct 64864 CCGTTTCGAGGAACTCTGCCAAGACCTTTTCCGTAGCA-CTCTCGATCCTGTCGAGAAGG 64806 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGT 350203 | | ||| | || || | || || || | ||| | || | || || ||| Sbjct 64805 TCCTTCGCGATTCCAAGAT-TGATAAGGCCAATGTGCACGAAATCGTCCTTGTCGGCGGT 64747 Query 350204 TCTACACGTATTCCAAAAGT--TCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 || || |||||||| | |||| | | | || || || |||||||| || || | Sbjct 64746 TCAACTCGTATTCCTCGTATCGTCAA--GCTCGTCTCCGACTTCTTTAATGGTAAGGAGC 64689 Query 350262 CTT-CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCT 350320 | | ||| || |||| || ||||| |||||||| || ||||||||||| || || | Sbjct 64688 CCAACAAGAGCA-TTAACCCCGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGCTGCG 64630 Query 350321 ATTTTATCTGGAAATAAGAGTTCT---AAAATTGATGATCTATTACTACTAGATGTAACT 350377 ||| |||| || | | | |||| || | | | |||||| | || || || || || Sbjct 64629 ATTCTATCCGG---TGACACTTCTGAGAAGACTCAGGATCTACTTCTCCTCGACGTCTCT 64573 Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437 || || || || || | |||||| |||||| || ||||| | || || | || Sbjct 64572 CCCCTCTCCCTCGGTATTGAAACTGCTGGTGGTGTGATGACCGCACTCATCAAGCGTAAC 64513 Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497 | ||||| || || || ||||| |||| || || || | || ||||| || || | Sbjct 64512 ACCACTGTCCCGACTAAGAAGTCTGAAACCTTCTCAACTTACGCCGATAACCAACCTGGT 64453 Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557 || || ||||| || || |||||||||||||||||||| || || || ||||| Sbjct 64452 GTGCTCATCCAAGTCTTCGAGGGTGAACGTGCTCGCACTAAGGACAACAACCTCCTTGGG 64393 Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617 |||| || || || ||||| || | || || ||||| || || ||| | Sbjct 64392 AAATTCGAGCTTTCTGGTATCCCACCTGCTCCCCGTGGTGTACCTCAAATCGAGGTCACC 64333 Query 350618 TTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 ||||| || ||| | || ||||| || |||||| | || | ||| || Sbjct 64332 TTCGACATCGATGCCAACGGTATCTTGAATGTTTCTGCCGCTGATAA 64286 Score = 168 bits (186), Expect = 2e-36 Identities = 281/402 (70%), Gaps = 3/402 (1%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 ||| |||||||| || || ||||| | | |||||||| |||| ||| ||||||| | Sbjct 65474 ACCTGAAGAAATATCTTCGATGGTCCTCCTCAAAATGAAAGAAACTGCCGAAGCATTCCT 65415 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || || | || | | || | || || || || ||||| ||||| | || || Sbjct 65414 CGGCACCACTATCACCAACTCAGTCGTGACCGTTCCCGCGTATTTCAATGACTCTCAACG 65355 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | ||||| || || || || | ||| | || | ||||| || | || ||||| || Sbjct 65354 TCAGGCAACCAAGGACGCCGGAACCATATCCGGAATGAATGTCCTCCGTATTATTAACGA 65295 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTA 349769 ||| ||||| || || ||||| ||||| || || |||| | ||| | || ||| Sbjct 65294 ACCAACTGCCGCGGCGATTGCTTATGGCCTCGACAAAAAG-GTGTCTGGCGAGCGTAATG 65236 Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 | | ||||| ||||| || || || ||||||||||| || ||| | || | ||||| | Sbjct 65235 TCTTGATTTTCGATTTGGGAGGAGGAACTTTTGATGTTTCCCTATTGACGATCGAAGAAG 65176 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | ||||| ||||| ||||| ||||||||||| || |||||||| || || || ||||| | Sbjct 65175 GTATTTTCGAAGTCAAAGCCACTGCTGGTGACACCCATCTTGGCGGTGAGGACTTTGACA 65116 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 | | | ||| || ||| || ||||||| ||||| |||| Sbjct 65115 ACAGGTTGGTTAACCACTTTATTCAAGAATTCAAGCG-CAAG 65075 Score = 116 bits (128), Expect = 1e-20 Identities = 190/272 (70%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 |||||| ||||| ||||||||| ||||||||| ||||||||||| ||||| || || Sbjct 178799 TGTACCTGCCTACTTTAATGATTCCCAGCGTTTGGCAACAAAAGACGCTGGTGCTATCGC 178858 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | ||||||| | || || ||||| || |||||||| || ||||| || || || Sbjct 178859 TGGCCTCGATGTTCTCCGTATCATCAATGAGCCAACTGCTGCCGCTATTGCTTACGGTCT 178918 Query 349741 TGA--TAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || ||| | || ||||| || | || ||||| ||||| || ||||| ||| Sbjct 178919 CGACCGTCAATCAAAAAC--TGAAAAGAACGTCCTCATTTTCGATTTGGGAGGTGGAACT 178976 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || | | | | || | || | || || || ||||||||| Sbjct 178977 TTCGATGTTTCCCTTTTGAATATCAGCGGTGGTGTCTTCGCTGTCAAGGCGACTGCTGGT 179036 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || ||| | ||||| || || ||||| || Sbjct 179037 GACACTCATTTGGGTGGTGAGGACTTTGACAA 179068 >seq1039 Length=11967 Score = 116 bits (128), Expect = 1e-20 Identities = 380/576 (66%), Gaps = 16/576 (3%) Strand=Plus/Plus Query 349979 ACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATT 350038 ||||| || |||||||| |||||| | || || ||| | || || ||||| || ||||| Sbjct 2310 ACTGCTTGCGAACGTGCCAAGCGTACTTTTTCTTCTGCCACTCAGACCTCGATCGAAATC 2369 Query 350039 GATTCTCTTGC-TGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||||| |||| | | || | || |||| | || |||||| ||| | ||||| || Sbjct 2370 GATTC-CTTGTATAAGGGTATTGACTTCTACACTTCCCTTACACATGCCTGTTTTGAGGA 2428 Query 350098 ATTATGTATGGATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | || ||| ||||| | |||| | | |||||||| || || || | ||| Sbjct 2429 ACTCTGCCAGGACCTTTTCTGTAGCA-CTCTCGATCCTGTCGAGAAGGTCCTTCGCGATT 2487 Query 350157 CAAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 | || || | || || || | ||| | || || || |||| || |||||| Sbjct 2488 CCAAGAT-TGATAAGGCCAATGTGCACGAAATTGTCCCTGTCGGCAGTTCAACTCGTATT 2546 Query 350216 CCAAAAGT--TCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT-CTAGATCA 350272 || | |||| | | | || || || |||||||| || || || | ||| || Sbjct 2547 CCTCGTATCGTCAA--GCTCGTCTCCGACTTCTTTAATGGTAAGGAGCCCAACAAGAGCA 2604 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332 | || || || || |||||||| || ||||||||||| || || | |||||||| || Sbjct 2605 -TCAACCCTGACGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGCTGCGATTTTATCCGG- 2662 Query 350333 AATAAGAGTTCTAAA-ATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | | | |||| || | | | |||||| | || || || | |||| || || || || Sbjct 2663 --TGACACTTCTGAAGACTCAGGATCTACTTCTCCTCGACGACTCTCCCCTCTCTCTCGG 2720 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | |||||| |||||| || ||||| | || || | || | ||||| || || Sbjct 2721 TATTGAAACTGCTGGTGGTGTGATGACCGCACTCATCAAGCGTAACACCACTGTCCCGAC 2780 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGT 350511 || ||||| |||| || || || | || || || || | | || || ||||| Sbjct 2781 CAAGAAGTCTGAAACCTTCTCAACTTACGCCGACAACCAATCTGATGTGCTCATCCAAGT 2840 Query 350512 ATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 || | |||||||||||| ||||||| || || || Sbjct 2841 CTTCAAGGGTGAACGTGCTTGCACTAAGGACAACAA 2876 >seq109 Length=35798 Score = 100 bits (110), Expect = 9e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 223703 GCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCA 223762 |||||||| ||||| | | | ||||| | || | ||||||||||||||| || || Sbjct 2884 GCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAATGTCAAACCC 2943 Query 223763 GGCATTAAACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATA 223822 ||||| || |||| || |||||||||||||| | ||| | | || ||||| || Sbjct 2944 GGCATCAATCCTCGTTTCTTCATCCAAAATATGCAGGCAAACGACGCAGAGAAAAAAATG 3003 Query 223823 CCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCT-TTGTCTCCTAT 223881 ||||| | ||||| ||||| || || ||||||| ||||| | || ||| || Sbjct 3004 CCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAA-GTGAATTTATTATCTTGAAT 3062 Query 223882 CCATTTTAATGCCCAATCTGCTTTTTTCTTAATACAAGAAAAATTTTCTAAAGCATTAAA 223941 ||| | | ||||| | ||||||| | || || || | || | |||| | || || || Sbjct 3063 CCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCAATAGAGTTGAA 3122 Query 223942 CAACTTCGA 223950 ||| |||| Sbjct 3123 TAACATCGA 3131 >seq72 Length=122076 Score = 98.7 bits (108), Expect = 3e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 |||||||||||||| |||||||| ||||| |||||| | || || | ||| |||| Sbjct 80141 GTTGGTGGTTCTACGCGTATTCCCAAAGTCCAACAGCTCCTCAAAGAATATTTCGGTGGC 80200 Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 || |||||||| | || ||||| |||||||| ||||| |||||||| || |||||| Sbjct 80201 AAGGAACCTTCAAAGGGTATCAATCCTGATGAAGCCGTTGCTTATGGTGCCGCAGTTCAG 80260 Query 350315 GCATCTATTTTATCTGG 350331 | | ||| | ||||| Sbjct 80261 GGAGGTATCCTCTCTGG 80277 >seq1072 Length=303801 Score = 96.9 bits (106), Expect = 1e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||||||||| || || ||||| Sbjct 211772 CATACCGCCACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATC 211831 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || |||||||| |||||||| || || |||||||| || || || Sbjct 211832 CGAGAGAGTTCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAGACGTTGTTGGTCTGG 211891 Query 140627 AGGAAT 140632 |||||| Sbjct 211892 AGGAAT 211897 >seq102 Length=127478 Score = 87.8 bits (96), Expect = 5e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || || || || ||||| ||||| || || | ||||| |||||||| | Sbjct 68432 CAAG-TGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCCATCTTCGA 68374 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAAT 140632 |||| ||||| || ||||| | |||||| |||||||||||||| Sbjct 68373 GTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAAT 68331 >seq31 Length=238504 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | ||||| || || ||||| ||||| || |||||| Sbjct 176111 ACCACCACGAAGACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACT 176052 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| |||||||||||||| || || || || || || |||||||| || Sbjct 176051 CAGAGTACGTCCATCCTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGGGGG 175992 Query 140630 AATTC 140634 ||||| Sbjct 175991 AATTC 175987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515216522901653