Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq35 136 4e-27 seq482 82.4 8e-11 >seq35 Length=211330 Score = 136 bits (150), Expect = 4e-27 Identities = 283/416 (68%), Gaps = 9/416 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | || || | || || || |||| | ||||||||| | |||||||||| Sbjct 160095 CCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCCACGCTTC 160036 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||||||||||| |||||| ||| |||||| |||||||| ||| |||||| Sbjct 160035 TTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGCAGCAAAG 159976 Query 74889 GCGACAAGGCGTTGCGCGAA---CG-GTGCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 || || || || | |||| || ||| ||| | | ||||| | ||||||| || Sbjct 159975 GCTACGAGACGCTCGCCGAAAACCGAGTG-TTCGTCACTGATCCAGCGCAGAGCCCACTC 159917 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || || || |||| ||| | ||| ||||| || | || ||| | || | Sbjct 159916 GGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAATCACGTTCGAC 159857 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 || || |||| | |||| || | ||| ||||| ||||| || ||||| ||| | Sbjct 159856 AGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCGGAGTGAATGTTCTCCAT 159797 Query 75065 GAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA--A 75122 | |||| || ||||||| | |||||||| || | |||||| || || || || Sbjct 159796 CATAATCTGGAACCCGTAGAAGCAACGCGCCTCAGCGACCTGTACTTCGTTCGAGAAGCG 159737 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 ||| | | |||||| |||| ||||| || |||||||| || || || || || Sbjct 159736 TTC--GAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAACGCGAGGAC 159683 >seq482 Length=177074 Score = 82.4 bits (90), Expect = 8e-11 Identities = 284/439 (65%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||| ||| || | || || ||| | | ||||||||||| || || |||||| Sbjct 124138 CCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCGCGCTTC 124197 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || ||||| || |||| | ||| || ||| || ||||| || |||||| || || Sbjct 124198 TTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCAGCGAAT 124257 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTC 74944 || || | | | || || |||| ||| ||| ||||| | | ||||| || Sbjct 124258 GCCACCAATCTCTCTGC-AAAAGTGCTTCGTTTGTCAGATATCCATTTGAGGGCCCAGTC 124316 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 ||||| || |||| ||| || | || || || || | |||||| ||| | | Sbjct 124317 GGCTTTGCGCTTGA-TGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGCGTTGAT 124375 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 ||||||||||| | || || | || ||||| || || ||||||| || Sbjct 124376 TAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGTTTTCCA 124435 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| || | || || | |||||||| || || || || |||||||| Sbjct 124436 TCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTGAAAAGC 124495 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| || | ||||| ||||| |||||||| || || || || || Sbjct 124496 GCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGACGTGGG 124555 Query 75184 TGATAAAGTGGCGCTCATC 75202 |||| || || ||||| || Sbjct 124556 TGATGAAATGACGCTCGTC 124574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202654769800