Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq250 196 5e-45 seq1072 178 1e-39 seq338 102 9e-17 seq51 93.3 5e-14 seq482 89.7 6e-13 >seq250 Length=164446 Score = 196 bits (216), Expect = 5e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | ||||| ||||| || || | ||||| ||||| Sbjct 133484 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTGGAGTCGTC 133543 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| ||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 133544 TGATACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 133603 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || |||||||| ||||| || || |||| || || || | || ||||| Sbjct 133604 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 133663 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||| ||||||||||| || | |||||||| ||||| Sbjct 133664 TATCCAAAAAGAATCGACTCTTCATCTTGTTCTCCGTCTTCGTGGTGG 133711 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| ||||| || ||||||||||| ||||| | Sbjct 133713 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAGGTCGAGTCTTCT 133772 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||| || || |||||||| ||||| Sbjct 133773 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 133832 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||||| |||||| || | |||||||| Sbjct 133833 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 133892 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || || |||||||| Sbjct 133893 ATTCAGAAAGAGTCTACCCTTCATCT 133918 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| || || ||||| | || ||||| || |||||||||||||||| ||| || Sbjct 133362 ATTCCTCCTGATCAACAGCGATTGATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACT 133421 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || | || |||||||| ||||| ||||| || | |||||||| ||| Sbjct 133422 CTTTCTGACTACAACATTCAGAAGGAATCTACTCTGCATCTTGTTCTTCGTCTTCGTGGT 133481 Query 27631 GGA 27633 ||| Sbjct 133482 GGA 133484 >seq1072 Length=303801 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| |||||||| ||||||||||| Sbjct 211032 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 210973 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 210972 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 210913 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| | ||||||| ||| || || | || || || Sbjct 210912 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 210853 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || |||||||| || Sbjct 210852 ATCCAGAAGGAGTCGACTCTTCACCT 210827 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || ||||||||||||||||| | Sbjct 211260 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 211201 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 211200 GACACTATTGACAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 211141 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| ||||| | ||||||| ||| || || | || || ||| Sbjct 211140 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 211081 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || || || ||| | |||||||| || || Sbjct 211080 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 211034 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || ||||| || || ||| | ||||| ||||| Sbjct 211488 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 211429 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || ||||| |||||||| |||||||| || || Sbjct 211428 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 211369 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| || || || ||||| ||||| |||| || ||||| | ||||| || Sbjct 211368 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 211309 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | ||||| || || || Sbjct 211308 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 211262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||||||||| || ||||| ||||| ||||| |||||||| ||||| | || || Sbjct 211897 ATTCCTCCAGACCAACAACGTCTGATTTTCGCTGGAAAGCAACTTGAGGACGGACGAACT 211838 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || ||||||| || ||||| || || |||||| | |||||||| || Sbjct 211837 CTCTCGGATTACAACATCCAAAAAGAGTCCACCCTCCACCTAGTCCTTCGTCTTCGTGGC 211778 Query 27631 GG 27632 || Sbjct 211777 GG 211776 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| || || ||||| || ||||| || ||||| || ||||| ||||| |||| ||| | Sbjct 211613 GAATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGAA 211554 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 |||| | ||||| || | || ||||||||||| || || || ||| | ||||| || | Sbjct 211553 CCCTTTCCGACTACAACATTCAGAAGGAATCCACACTCCACCTTGTCCTTCGTCTCCGTG 211494 Query 27629 GTGG 27632 | || Sbjct 211493 GAGG 211490 >seq338 Length=27447 Score = 102 bits (112), Expect = 9e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 |||||||| || | | || |||| |||||| |||| || |||||||| || Sbjct 3322 CCGATGCCGCCAGCTGATTTGCTAATCAAAGCACAATTTTTCAGCGTATCATAAATACCA 3381 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||| || | |||||| | |||||| || ||||| |||| | | Sbjct 3382 TCGATGGAGTCGTCCTTCATGGACATCAAGAAGCAAGACGACATTTGAGCTGAAGTGGTC 3441 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 ||||||||||| || ||||| ||||| |||||||| | ||||| ||||| || | |||| Sbjct 3442 CCGGCATTGAAAAGGGTTGGTGTCGCATGAATGAAGAATCGGTTCGACATTAGATTATAG 3501 Query 81682 GTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACAT 81740 || | || ||| |||||| || || || || || ||||| |||||||| ||||| Sbjct 3502 GTCTGTAGAACACGTTCAATATCATCTCCATGTATTCCAATAGCCACACGCATGAACAT 3560 >seq51 Length=295103 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/318 (67%), Gaps = 21/318 (7%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||||||| || || ||||| ||||| | || || |||| ||| |||| || Sbjct 221388 CATGAAGGCGTCAGCGAGACCTTGAACACCGATTCCAATGGGACGGTTACGCATGTTAGA 221329 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| |||||| || || ||||| |||| ||| |||||||| || |||||| | Sbjct 221328 TCGACGGGCCTCAGGGATGGGGTAGTAGTTGCGATCAATGACGCGATTGAGGTTGAAAG- 221270 Query 80835 AACAACCCGT---GTAACATCATGAAGTTTCTGAAA---GTCGAATTGGTTCC------- 80881 | ||| | ||||||||||| |||||||| || || |||| | || | Sbjct 221269 --CGACCGTTTTCGTAACATCATGGAGTTTCTGGAAATCGTAGAATGGTTTGCCAGATGC 221212 Query 80882 --CCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC 80936 ||||||| | | | ||||| ||||| || ||||| || || || || || Sbjct 221211 ATCCTTCACTATGTAGGTTGGAAGAGCAAGGGAAGCAAGATTACAGACAGCAGTTTCATC 221152 Query 80937 AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTT 80996 | | | | ||||| ||||| ||||| | ||| || || || || || ||||| Sbjct 221151 CGGAGAAGAGTATTCGACAATTTCAGTGCAAAGATTGGATGATTTGATGACTCCGAGGTT 221092 Query 80997 TTTCTGGTTTGACTTGGC 81014 || ||||| || ||||| Sbjct 221091 CTTTTGGTTAGATTTGGC 221074 >seq482 Length=177074 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || ||||| || ||||||||||| ||| ||| ||||||||| |||| ||||| || Sbjct 124248 TGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGAAGCGCGG 124189 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||| || || | | ||| |||||||| ||| Sbjct 124188 CCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATC 124152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296491555120