Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq109 172 5e-38 seq482 159 3e-34 >seq109 Length=35798 Score = 172 bits (190), Expect = 5e-38 Identities = 380/565 (67%), Gaps = 6/565 (1%) Strand=Plus/Plus Query 4542 AATAA-ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 ||||| ||| ||||| || ||||| ||||| || | |||||| ||||| || ||||| Sbjct 2874 AATAAGACAGGCAAATTCGGTATGCATTCCTTCATCGCAGCTAATGAGTTCATTTGAAAA 2933 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 || || || ||||| || |||| || || | ||||||||| |||||| ||| |||| Sbjct 2934 TGTCAAACCCGGCATCAATCCTCGTTTCTTCATCCAAAATATGCAGGCAAACGACGCAGA 2993 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720 || || |||||||| | || ||||| ||||| || || | || | | || Sbjct 2994 GAAAAAAATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAAAGTGAATTTATT 3053 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 |||| |||||| | | ||||| || |||||| | || | ||||||||| || | || Sbjct 3054 ATCTTGAATCCACTGAAGCGCCCATTTTGCTTTTCTATTGATGCACGGAATAGTTTCAAT 3113 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 || ||| ||||| | || || | | ||||||| || | || || | Sbjct 3114 AGAGTTGAATAACATCGAACGCTCTGGTGCATTTCGAATATATGTTTGAATAAGCAAAGA 3173 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 || |||||||||| ||||| || || |||||| || || || || || | || || Sbjct 3174 GTAGGTTTCAGAATGAATATTCTCCATCATAATCTGGAAACCATAGAAACACCGCGCCTC 3233 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTT-TCGTTTACTATACCGTCAC 4959 | || || | |||||| |||| | | | | || || |||||||| ||||| || Sbjct 3234 CGGCACCTGTATTTCGTTGGAAAAA-TGACAAATCAGATTCTCGTTTACAATACCATCCG 3292 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 || ||||| ||||||| || |||| | ||| | | || | || || ||||| | Sbjct 3293 ACGCAGCAAAGAACGCCAGGACGCGAGAAACGAAGAATTTCTCATTAGCGTTGAGTTTGT 3352 Query 5020 T---CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 | ||||| | | || || | | ||||| ||||| ||||| || |||| || Sbjct 3353 TATTCCAGTCGTTGATGTCATTCGAAAGATCAATCTCTTCCGATGTCCAGAATGACGATT 3412 Query 5077 CCGCTTTTTTGTACATAGACCAAAT 5101 |||||||||||||| |||||||| Sbjct 3413 GAGCTTTTTTGTACATTGACCAAAT 3437 >seq482 Length=177074 Score = 159 bits (176), Expect = 3e-34 Identities = 371/553 (67%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 |||||| ||||| ||| |||||||| |||| ||| || || ||||| ||| | |||| Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| | || | ||| || | ||| || || | || || ||||||||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || || || || || || || || || |||| | || | ||| |||||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 124295 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||||| | ||||||| ||||| ||| | |||||| ||||| | ||| |||| Sbjct 124296 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 124355 Query 4787 AAATA-ATTTAC---TTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || | || | | || || | || |||| | || || || || || || | Sbjct 124356 GAAGAGATATGCGCGTTGATTAAGAT---CCTTG-ACGTATGTATCGATAAGCAGAGAGT 124411 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 | |||||||||| | ||||| || || || || || |||||| | | || || | Sbjct 124412 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAG 124471 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | |||| |||||||| |||| | || | | |||||||| || ||||||||| || Sbjct 124472 CTGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 124531 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCA-GGCTTAA--GTTTTT 5019 | ||||| || || | || || | || || | | |||||| | |||| | | | Sbjct 124532 CGGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGT 124591 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 |||||| | | ||| | ||| | |||| ||||| ||||| ||||| ||||| | Sbjct 124592 TCCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTG 124651 Query 5080 CTTTTTTGTACAT 5092 |||| |||||||| Sbjct 124652 CTTTCTTGTACAT 124664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039445694683