Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F002003045.1_202017-02-02] 1,951 sequences; 39,922,873 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq35 178 2e-39 seq482 111 2e-19 seq51 93.3 6e-14 seq344 87.8 2e-12 seq338 86.0 9e-12 >seq35 Length=211330 Score = 178 bits (196), Expect = 2e-39 Identities = 366/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 48155 ATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCC 48214 ||| | ||| ||||| | ||| || | ||||| || || | | || ||||||| ||| Sbjct 160102 ATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCC 160043 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 ||| || || | |||||| || | |||||| || ||||| ||||| |||||||| || || Sbjct 160042 ACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGC 159983 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGC 48331 ||||| || || | ||| ||| || | ||||| ||||| || | || Sbjct 159982 AGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTGATCCAGCGCAGAGC 159923 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| || ||||| ||| | ||||| || || || ||||||| ||| || || | Sbjct 159922 CCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAATCACG 159863 Query 48392 ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451 ||| ||||| | ||| || || || | |||| || | ||||||||||| || Sbjct 159862 TTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCGGAGTGAATGTT 159803 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511 || || ||||| || ||||| || || | ||| || | || |||||| || | | Sbjct 159802 CTCCATCATAATCTGGAACCCGTAGAAGCAACGCGCCTCAGCGACCTGTACTTCGTTCGA 159743 Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571 || ||||| | |||||| || || || |||||| || ||||| || || | || Sbjct 159742 GAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAACGCGAGGAC 159683 Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTT 48628 | | || || || |||| || | ||| | || |||||||||| | ||||| Sbjct 159682 ACGGGAGATGAAGAATCGTTCGCTGTCATTCAGGCGGTTGTTCCAGTCATGAAGGTCTTT 159623 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 ||||| ||| | ||||| || ||||| || || ||||| || || || ||||| | ||| Sbjct 159622 TGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCA 159563 Query 48689 TAT 48691 ||| Sbjct 159562 TAT 159560 >seq482 Length=177074 Score = 111 bits (122), Expect = 2e-19 Identities = 366/560 (65%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| ||| | ||||||||||| || || | ||||| ||| | || || Sbjct 124116 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 124175 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || || || || | ||| || || | ||||| || |||||||| || Sbjct 124176 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 124235 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG-TTGT--- 48315 || || || || || || ||||| | ||||||| | || | |||||| |||| Sbjct 124236 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 124294 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 |||||| | ||||| || || || ||| | || || ||||||||||| || | Sbjct 124295 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 124354 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 |||||| | || ||| ||| || ||||| ||||| || | ||| || Sbjct 124355 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 124414 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TG 48494 |||| || |||| ||||| || || || || || ||||| | | ||| || | || Sbjct 124415 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 124474 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || || || | |||| || || || ||| || || || || || ||| || Sbjct 124475 CT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 124533 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTCGTTG-GAAGTCAGTTTATT 48610 ||||| ||||| | || || | || |||| | || ||| | || | | || Sbjct 124534 GCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATC-GCTCGTT 124592 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | ||| | | | || | ||||| | ||||| || ||||| ||||| Sbjct 124593 CCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGC 124652 Query 48671 TTTTTTATACATATTCCATA 48690 ||| || ||||| | ||||| Sbjct 124653 TTTCTTGTACATCTGCCATA 124672 >seq51 Length=295103 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || |||||||||||| |||| ||| |||| | ||| || || || Sbjct 220748 AAGAGATCCGGAATCCATAGAGCATAGAATAAATCACGGGCGCGCACTTCCTCTTTGCCA 220689 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| | | ||||| | | | | ||||||| |||||| ||||| ||||| || Sbjct 220688 TGATTCTTCCTCAAATCGATCATCGCGAAGATATCAGCATGCCAAGGTTCGAGATAGATA 220629 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | ||||| || || ||||| || || || | ||||| || || ||| || Sbjct 220628 GCGAAAGCCCCAGGACGCTTGTTACCACCTTGGTCGACATATCGTGCAGTAGCATTGTAC 220569 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 | | | |||||| | |||||| || || ||||| || || | ||| ||| Sbjct 220568 GCCCGAAGCATTGGCACAATACCATTCGAGTACCCATTCGTGCCGGCAATGTAA 220515 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||||||||||| || ||| |||||||| | | |||||||| |||||||| | Sbjct 222151 GTAAACTGAATTGCTTGAGCTGCAGGTTTTGTCCTCAAGTAGTACATGCCAGTTTTCAAT 222092 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGA---ATAACTAGGATCGGCT 76898 ||| |||| ||||||||||||||||| |||| || || || | | || ||| Sbjct 222091 CCCTTCTTCCACCCGTAGAAATGCATGCTCGTCAATT--GACCCAT-AGTTGGCGAGGCG 222035 Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 | ||||| ||||| ||||||||| |||||| || || | ||||| || Sbjct 222034 AGATGAACATTCAAACTCTGACTTTGGCAGATGAACGCGCCACGGTCAGCAGC 221982 >seq344 Length=30398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 76810 TTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGC 76869 |||| | ||||| ||||| |||||||| | || |||||||| || |||||||| | Sbjct 13318 TTGTTCTCAGATAATACATTCCAGTTTTCAAGCCTTTTCTCCATCCATAAAAATGCATAC 13259 Query 76870 TTGTCAGTTTGGA---ATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGAT 76926 |||| || | || ||| | ||| ||| | ||||||||||| ||||||||| Sbjct 13258 TTGTTAGCT--GACCCATAGAT-GGAGAGGCAAGATGAATATTCAAACTCTGACTTTGGC 13202 Query 76927 CGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAA 76986 |||||| || || | ||| | || | | | ||| || ||||||| ||||||||||| Sbjct 13201 AGATGAACGCGCCACGATCCACGGCAAGGTCCAAAATCGTTTTTTGAGAAATTTCCCAAA 13142 Query 76987 TAGTTTTGAAAAC 76999 ||||| |||| Sbjct 13141 CCGTTTTATAAAC 13129 >seq338 Length=27447 Score = 86.0 bits (94), Expect = 9e-12 Identities = 163/239 (68%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 78011 CATA-AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| || ||||| || |||||||| ||| || | ||| || | | | |||| || | Sbjct 2998 CATACAACAGATCTGGAATCCATAGTGCATAGAACAAATCACGAGCACGAAGTTCCTCCT 3057 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 | || ||||| | | || | || | |||||||| |||||| ||||| | | Sbjct 3058 TGCCATGGTTCTTGCGCAAGTTGACTATATCGAAAATATCAGGATGCCAAGGTTCAACGT 3117 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | || || ||| || |||||||||||||| || ||||| | ||||| || || || Sbjct 3118 AGATAGCGATAGACCCTGGTCGTTTATTACCCCCTTGATCAACATATCGTGCTGTAGCAT 3177 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 ||| || | | |||||| ||||| || ||||| || ||||| || | |||||| Sbjct 3178 CATATACACGAAGCATTGGTATAATGCCATTAGAATAACCGTTTGTACCGGCGATATAA 3236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651858764640