Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2980 104 5e-17 seq176 100 6e-16 seq5767 96.9 7e-15 seq1170 95.1 3e-14 seq5862 86.0 1e-11 >seq2980 Length=15283 Score = 104 bits (114), Expect = 5e-17 Identities = 138/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 230424 TTGT-GACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTAC 230481 |||| || ||| |||| ||| ||| | ||||| |||||| | | || ||| | || ||| Sbjct 14677 TTGTAGATGCTCTTCC-TGTTGCCCTCATTGGTATGAACTCCAAGCTCATGTGCCAATAC 14735 Query 230482 ATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCT 230541 || || ||||| |||||||| | || | ||| | ||| || || ||||||||| Sbjct 14736 ATTGAGTTCGTCGCCGACCGTCTGTTGGCTGCTTTGGGTAACCCCAAGGTGTACAACGTA 14795 Query 230542 AAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAA 230601 | |||||||| | || ||||| | || ||||| || || ||||||||||||||||| Sbjct 14796 ACCAACCCCTTCGACTTCATGGATATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAG 14855 Query 230602 AAGCGTGT 230609 ||||| || Sbjct 14856 AAGCGAGT 14863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 230444 GCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCA 230503 |||| || ||||||||||| | ||| ||| | ||||| ||||| ||||| ||||||||| Sbjct 11783 GCCTCATAGGCATGAACGCAGCACTCATGCGTCAGTATATCGAGTTCGTTGCCGACCGCC 11724 Query 230504 TTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGG 230563 | | || | || || | || |||||||| |||||| || | || |||| Sbjct 11723 TCCTCGTCTCCCTCGGAAATCCCAAGTACTACAACTCCGCGAACCCATTCGACTTCATGG 11664 Query 230564 AGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTC 230610 | | || || | ||||| ||||||||||| || || | ||||||| Sbjct 11663 ATATGATCTCATTGCAAGGCAAGACCAACTTTTTTGAGAGGCGTGTC 11617 >seq176 Length=24199 Score = 100 bits (110), Expect = 6e-16 Identities = 127/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 230441 GTCGC-CTTATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGA 230498 ||||| || |||||||||||| | ||| || ||| | || |||||||| ||||| || || Sbjct 20048 GTCGCTCTCATTGGCATGAACTC-GAAGTTGATGTGTCAATACATCGAGTTCGTCGCTGA 20106 Query 230499 CCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATT 230558 ||| | || ||| | || || || ||||||||| | |||||| || | || Sbjct 20107 CCGTCTCTTGTGTGCCTTGGGCAACCCTAAGGTGTACAACGTGACGAACCCTTTCGACTT 20166 Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||| | || || |||||||| ||||| ||||||||||| |||||||| Sbjct 20167 CATGGACATGATCTCTCTTCAAGGCAAGACAAACTTCTTCGAGAAGCGTGT 20217 >seq5767 Length=6734 Score = 96.9 bits (106), Expect = 7e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 292178 TTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAACCGAACGAAGGG 292237 |||||||| || || || ||||||||||| ||||| ||| | |||||||| || ||| Sbjct 155 TTAGCCAGTAGCTGTTTTGTATCCTTTGGCAAGCAGTAACCGCCATAACCAAAACTGGGG 214 Query 292238 TTTGAGTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATGATTTCTTTCGCA 292297 || ||| | || ||||| || |||| ||| || | ||||| | || | | Sbjct 215 TTGTTGTAATGGTTGCCTATGCGCGGATCCATGCACACGCCTTGGATGATCTGCTTGGTA 274 Query 292298 TTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCATTGCA 292357 | || | ||| ||| | ||||| ||||||||||| |||| |||| |||||| Sbjct 275 TCCAGTCTGTGGATGGCGGCGTAGGTATCCAGTTCGTTGAAAAATGCCACTCTCATTGCG 334 Query 292358 AGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTC 292395 || || ||||| | |||||||| | ||||| ||||| Sbjct 335 AGGTATGTGTTTGCAAATAGTTTTATTGCCTCAGCTTC 372 >seq1170 Length=3698 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || |||||||| || || |||||||| || | ||| || | |||| ||| Sbjct 1955 CAAGCCTCCACATCTGAGCTCTACGGAAAAGTCGTTGAGACTCCCCAGAGCGAAACGACC 2014 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || || |||||| ||||||||||| || || || ||||| |||||||| Sbjct 2015 CCCTTCTACCCTCGTTCGCCGTATGGTGTCGCCAAGCTCTACGCGTACTGGATCACGGTC 2074 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268 ||||| | || |||||||| |||| || || || || | |||||||| |||||| Sbjct 2075 AATTATAGGGAATCGTATGGCATGTATGCGTGCAATGGTATCTTGTTCAATCATGAGAGT 2134 Query 61269 CC 61270 || Sbjct 2135 CC 2136 >seq5862 Length=4026 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/160 (73%), Gaps = 5/160 (3%) Strand=Plus/Plus Query 319012 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 319071 |||||||| | || |||| | ||| ||| |||| ||||| | ||||||||||||||| Sbjct 833 TAACGCCAGAGCATGTACTCGAGGGGAGTCTTGTCGAGATGCTGATCGATGTGGTGGAAA 892 Query 319072 GCATGCTGTGCCACGTAAGC-AAGACGCATATTTGGATGCTTCCAAA---CACTACCGAT 319127 || |||||||| |||||| | | ||| || || || |||||||| | ||| ||| | Sbjct 893 GCGTGCTGTGCGACGTAACCGATGAC-CAAGTTGGGGTGCTTCCAGATCTCACCACCCTT 951 Query 319128 GGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTG 319167 ||| ||||| | || |||| | ||| | ||||||| Sbjct 952 ATTGGGCTCCATATCACCAATGAGGAGCTTGACGAGGGTG 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057683736173870