Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1988 136 5e-27 seq105 113 5e-20 >seq1988 Length=7662 Score = 136 bits (150), Expect = 5e-27 Identities = 159/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 42975 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||||||||||| || ||||||||||| | ||||| || | || || Sbjct 3784 ACCAAGATGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGAGTGCGGCCATCTTC 3725 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||||| || | | ||||||||| Sbjct 3724 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTG 3665 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| ||| |||| ||| | | | || ||| || || || |||| ||||||||| | Sbjct 3664 GATCTTTGCCTTGA-CGTTGTCAATGGTATCGGAGGACTCGACCTCGAGCGTGATGGTCT 3606 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || |||||||| ||||| ||||| Sbjct 3605 TGCCAGTCAGGGTCTTTACGAAGATCTGCAT 3575 Score = 125 bits (138), Expect = 8e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 || |||||||| ||||| ||||| |||| ||||| || |||| || || ||||| ||| Sbjct 4852 GTACTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTACGACCGTCCTCGAGTTGCTTGCCA 4793 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TT 43105 ||||| || |||||||| ||||||| || | | |||||||||| ||| | || | || Sbjct 4792 GCGAAGATCAGTCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTGGCCTT 4734 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | |||||| || ||||| |||| ||||| || || ||||| | ||| Sbjct 4733 GACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTCAACGT 4674 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||||||||| Sbjct 4673 CTTGACGAAGATTTGCAT 4656 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 || |||||||| || || |||||||| | || || || | || || |||||||| ||| Sbjct 4284 GTACTCTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 4225 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| ||||||||||| | ||| | | |||||||||| ||| ||| ||| Sbjct 4224 GCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTTGCCTTG 4165 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| ||| || || || | |||||||| || || || | || Sbjct 4164 A-CGTTGTCGATCGTGTCAGACGACTCGACCTCAAGAGTGATGGTCTTTCCGGTCAAAGT 4106 Query 43166 CTTTACAAAGATTTGCATT 43184 ||| || ||||| |||||| Sbjct 4105 CTTGACGAAGATCTGCATT 4087 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| |||| || || || | || || |||||||| ||| Sbjct 4056 GTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCA 3997 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || | || |||||||| | || | || |||||||||| ||| || ||| Sbjct 3996 GCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3937 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| || || || |||| ||||| || |||||||| | |||| Sbjct 3936 ACATTGTCGATCGTGTCAGAGGACTCGACTTCGAGGGTGATCGTCTTGCCCGTCAACGTC 3877 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 3876 TTGACGAAGATCTGCAT 3860 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||| | ||| || || | || || || |||||||| || || Sbjct 4561 CTCCTTCTGGATATTGTAATCCGACAGGGTGCGGCCATCCTCAAGTTGCTTACCGGCAAA 4502 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || || ||||| | || | || |||||||| | ||| | |||| | | | | Sbjct 4501 GATGAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTGT-CTTGAATCTTTGCCTTAACAT 4443 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || || || || | |||||||| ||||| || | ||||| | Sbjct 4442 TGTCGATGGTATCAGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTCA 4383 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 4382 CGAAGATCTGCAT 4370 >seq105 Length=629 Score = 113 bits (124), Expect = 5e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 || |||||||||||||| ||||| || | || || || | || || || ||||| ||| Sbjct 576 GTACTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTACGTCCATCTTCGAGTTGCTTGCCA 517 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || || || |||||||||| || | | |||||||| |||||| || Sbjct 516 GCGAAGATCAGACGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTC 457 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | ||||||| || || || || | ||| |||||||| || || ||||| Sbjct 456 A-CGTTGTCAATCGTGTCGGAAGACTCGACCTCCAACGTAATGGTTTTCCCTGTGAGCGT 398 Query 43166 CTTTACAAAGATTTGCATT 43184 ||| |||||||| |||||| Sbjct 397 CTTGACAAAGATCTGCATT 379 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| |||||||| | || || |||||||| |||||||| Sbjct 343 CTCCTTCTGGATGTTGTAATCAGAGAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAA 284 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || || || || | || | || ||||||||| ||| || || | | Sbjct 283 GATGAGACGTTGTTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATT 224 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || || | ||||| || |||||||| || ||||| || Sbjct 223 GTCAATAGTGTCGGACGACTCGACCTCCAAGGTGATCGTCTTGCCCGTGAGAGTCTTAAC 164 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 163 GAAGATTTGCAT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571743628245720