Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1988 145 6e-30 seq105 105 5e-18 >seq1988 Length=7662 Score = 145 bits (160), Expect = 6e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||||||||||||||||| || ||| |||| || ||||| Sbjct 4859 GTGGAGCGTACTCTCCTTCTGAATGTTGTAGTCAGAGAGAGTACGACCGTCCTCGAGTTG 4800 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||||||||||||||| | ||||||||||||| ||| || Sbjct 4799 CTTGCCAGCGAAGATCAGTCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 4740 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||| ||||| Sbjct 4739 GGCCTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGT 4680 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || |||||||||||| Sbjct 4679 CAACGTCTTGACGAAGATTTGCATG 4655 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| || || || ||||||||| || ||||| || ||| ||| | || Sbjct 4581 ATACCAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAATCCGACAGGGTGCGGCCATCC 4522 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| || ||||| || || | || |||||||| ||||| | ||||||||||| Sbjct 4521 TCAAGTTGCTTACCGGCAAAGATGAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCT 4462 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| |||||| | | | | || | ||| ||||||| ||| || ||| Sbjct 4461 TGAATCTTTGCCTTAACATTGTCGATGGTATCAGAAGACTCGACCTCCAGGGTGATGGTC 4402 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| ||||||||| ||||| ||||| Sbjct 4401 TTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 4370 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||||||||||||||| || ||| | || || || || Sbjct 4063 GTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCGAGCTG 4004 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || ||||| || || ||||| ||||| | |||||||||||| || || Sbjct 4003 CTTTCCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 3944 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| ||| || || | ||| |||||||||||||| Sbjct 3943 AGCCTTGACATTGTCGATCGTGTCAGAGGACTCGACTTCGAGGGTGATCGTCTTGCCCGT 3884 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 3883 CAACGTCTTGACGAAGATCTGCAT 3860 >seq105 Length=629 Score = 105 bits (116), Expect = 5e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || ||||| |||||||| ||||||||||||||| ||| || | || | Sbjct 590 TACCAAGGTGAAGCGTACTCTCCTTTTGAATGTTGTAGTCGGAGAGTGTACGTCCATCTT 531 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | ||||| || || ||||| |||| || || |||||||| || | || |||||||| Sbjct 530 CGAGTTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTT 471 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| | || | || | |||| | ||| ||||||| ||||| || Sbjct 470 GGATTTTCGCCTTCA-CGTTGTCAATCGTGTCGGAAGACTCGACCTCCAACGTAATGGTT 412 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| |||||||| ||||| Sbjct 411 TTCCCTGTGAGCGTCTTGACAAAGATCTGCAT 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395025369782329