Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq176 147 3e-30 seq2980 132 6e-26 >seq176 Length=24199 Score = 147 bits (162), Expect = 3e-30 Identities = 362/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 |||| |||||||| | || || | ||| || || ||||| | || ||||| || || Sbjct 19871 TGCATGCCCTCGTCGCGGCTGATCAGTTCATTGGAGAACGTCAAGCCAGGCATGAGACCT 19812 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 | ||| || ||||| || ||||| || || || || || |||||||||||||| || ||| Sbjct 19811 CTCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATTCCTTCAACCGCA 19752 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAG 33771 |||||||||| |||| || | ||| | || || ||| ||||| | || Sbjct 19751 GCAAAGGCAACGAGTCGTTCGGC-GAACGCGGACT-TCTTGTCTGAGATCCAGCGTAAAG 19694 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || |||||||| || | ||||| |||||||| ||||| | ||||||| | Sbjct 19693 CCCAGTCAGCCTTCTTCTTGATGCAAGGAATCGTTTCGATGGCGTCGAAGAGATGCTCCC 19634 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 || | ||||| | || |||||||| | || |||| | || || ||||||| Sbjct 19633 GTTGGGTCTGGTCTTTGATGTACGTATCGATGAGGAGGGAATACGTCTCGGAGTGAATGT 19574 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || || || || || ||||| || | ||||| | || ||||| | Sbjct 19573 TCTCCATCATGATTTGGAAGCCATAGAAGCAGCGGGCCTCAGCTGCTTGGACTTCGTTGG 19514 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 | || ||||| | | ||| || || || || || || || || || || || | | Sbjct 19513 AGAACCGTTCAACGAGATTCTCGTTGACAATACCGTCCGAAGCCGCGAAGAAAGCAAGAA 19454 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCAATCATTGATATCT 34067 |||| || |||| |||| || ||| | | | ||| || | |||||| Sbjct 19453 CATGAGAGATGAAATGGCGCTCGT-TGTCGTTCAACCGGTGTTGCCAGTCGTGCATATCT 19395 Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || || | |||| |||||| ||||||| ||||| || || || || || ||||| | | Sbjct 19394 TTCGACAGGTCCATCTCTTCCGCTGTCCAGAATGACGCTTCGGCTTTCTTGTACATTTGC 19335 Query 34128 CAGAT 34132 ||||| Sbjct 19334 CAGAT 19330 >seq2980 Length=15283 Score = 132 bits (146), Expect = 6e-26 Identities = 369/563 (66%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| || ||||| |||| |||||||||||||| || | || || || |||| Sbjct 11959 CAAACAAGCAAAATCAGTATGCAACCCCTCGTCTCTACTGATCAGCTCATTCGAGTACGT 12018 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||||| ||||| ||||| | |||||| | |||||| || | ||||| | || ||||| Sbjct 12019 CAGTCCTGGCATGAGGCCCCTCTTTTTCAACCAAAAAATCGCCGCGAAACAGCCAGAAAA 12078 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG----T 33753 ||| || |||||||| || |||||||| | || | ||| | ||| ||| | Sbjct 12079 GAATATGCCTTCTACCGCTGCAAAGGCGACGAGACGTTCTGC-GAACGTAGACTGTTGAT 12137 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | ||||||| ||||||| ||||||||||| | | ||| || || || || || | Sbjct 12138 CTGATATCCACCGAAGAGCCCACTCGGCCTTCTTCTGGATACAGGGAATAGTCTCGATAG 12197 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | || | || | | | || |||| | || ||||| || | || | Sbjct 12198 CGTCGAATAAGTATTCTCGCTGCTTGACGTCTTGGATGTAGGTATCAATGAGGAGGGAGT 12257 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 || | || ||||| ||||| || || || || || |||||||| || | ||| || | Sbjct 12258 ACGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAGCAACGAGCTTCAG 12317 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 |||||| || | | |||||||| | | || || || || || ||||| | Sbjct 12318 CTGCCTGCACCTCGTTCGAGAATCGTTCGACGAGGTTCTCGTTGACGATCCCATCGGAGC 12377 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTA 34049 | || || || || | ||| || || |||| ||||| | ||| | | Sbjct 12378 CAGCGAAGAAGGCGAGTACGTGCGAGATGAAATGACGTTCGT-TATCGTTCAGACGGGTG 12436 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| || | ||| | || | || | ||||| ||||||| ||||| |||||| Sbjct 12437 TGCCAGTCTACCAGATCGTGCGAGAGGTCGATCTCTTCGGCTGTCCAGAATGAAGCCTCT 12496 Query 34110 GCCTTTTTATACATATTCCAGAT 34132 |||||||||||||| | ||| || Sbjct 12497 GCCTTTTTATACATTTGCCAAAT 12519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629736125220720