Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2980 134 1e-26 >seq2980 Length=15283 Score = 134 bits (148), Expect = 1e-26 Identities = 293/435 (67%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 13639 TTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698 || ||||| | |||| ||||| ||||||||| ||| | ||||| |||||||| || Sbjct 11942 TTCAGATGATGGAAAAGCAAACAAGCAAAATCAGTATGCAACCCCTCGTCTCTACTGATC 12001 Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || || || || | || | ||||||||| | || | ||||| |||||||| || || Sbjct 12002 AGCTCATTCGAGTACGTCAGTCCTGGCATGAGGCCCCTCTTTTTCAACCAAAAAATCGCC 12061 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 ||||| | || ||||||||||| || || || || ||||| || | || |||||| | Sbjct 12062 GCGAAACAGCCAGAAAAGAATATGCCTTCTACCGCTGCAAAGGCGACGAGACGTTCTGCG 12121 Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878 |||| | | || | ||||||||| |||||| || | || || | ||| | Sbjct 12122 AACGTAGACTGTTGATCTGATATCCACCGAAGAGCCCACTCGGCCTTCTTCTGGATACAG 12181 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCT-CTTTAGTACTTGAAATGTATGT 13937 || || ||||| || | |||||| | ||| || ||| | |||| ||||| || Sbjct 12182 GGAATAGTCTCGATAGCGTCGAATAAGTATTCTCGCTGCTTGACGTCTTG-GATGTAGGT 12240 Query 13938 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATA 13997 |||||| || | | ||| | || || || ||||| || || || || || || || Sbjct 12241 ATCAATGAGGAGGGAGTACGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTA 12300 Query 13998 AAAACATCTAGCTTCTGACCATTGTACCTC---CGAGTAAAATCTTTCTGCCAAGTTTTC 14054 || || | |||||| | || ||||| |||| |||| ||| | | ||| || Sbjct 12301 GAAGCAACGAGCTTCAGCTGCCTGCACCTCGTTCGAG---AATCGTTCGACGAGGTTCTC 12357 Query 14055 ATTAACAATACCATC 14069 || || || ||||| Sbjct 12358 GTTGACGATCCCATC 12372 Score = 100 bits (110), Expect = 3e-16 Identities = 361/562 (64%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| || ||| | |||||| || | || || | || || || || || Sbjct 14536 AAGCAAGCAAAGTCGGTATGCATGCCCTCGTCACGGCTGATCAACTCATTCGAGAAGGTC 14477 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 || || |||||||| || || || || |||||||| || | ||||| || ||||| ||| Sbjct 14476 AAGCCAGGCATCAAACCACGCTTCTTCAACCAAAAGATAGATGCGAAAGAGCCGGAGAAG 14417 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || ||||| || || || ||||| | || || || || | | || |||| Sbjct 14416 AAGATACCCTCGACGGCGGCGAACGCGACAAGACGCTCGGAGAATGCAGAGTTCTTGTCC 14357 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 || ||||| ||||| |||| || || || || || || || ||||| ||| Sbjct 14356 GAGATCCAGCGCAAGGCCCAGTCAGCCTTCTTCTTGATGCAAGGAATGGTCTCGATAGCA 14297 Query 13897 TTGAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | ||| | || || | |||| | ||||| ||||||| || || || | | | Sbjct 14296 TCGAAGAGGTGCTCGCGTTGCTTAGGGTCCTTGA--TGTATGTGTCGATGAGAAGGGAGT 14239 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 | | || || || ||||| || || || || || || || || || | |||||| | Sbjct 14238 ATGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAGCAACGAGCTTCAG 14179 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||| ||||| | | || | || | | ||| || || ||||||||||| | Sbjct 14178 CTGCTTGAACCTCGTTGGAGAACCGCTCGACGAGGTTCTCGTTGACAATACCATCCGAGG 14119 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTT 14131 | ||||| || || | | || | || |||| | || | | ||||||| || | Sbjct 14118 CAGCAAAGAAGGCGAGGACGTGTGAGATGAAGTGACGTTCATTGTCGTTGAGTCTGTTGT 14059 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 ||| ||| | ||||| || | ||| | || ||| | ||||| || || ||| Sbjct 14058 CCCAGTCGTGGAGGTCCTTCGACAAATCCATCTCCTCAGCAGTCCAGAAGGACGCTTCAG 13999 Query 14192 CTTTTTTATACATTACCCATAT 14213 | || ||||||||| ||| || Sbjct 13998 CCTTCTTATACATTTGCCAGAT 13977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478526888556360