Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinus_20polychrous_20[genbank_20GCA_5F000787475.1_202014-11-26] 10,349 sequences; 38,054,542 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq176 163 4e-35 seq2980 123 3e-23 >seq176 Length=24199 Score = 163 bits (180), Expect = 4e-35 Identities = 368/551 (67%), Gaps = 24/551 (4%) Strand=Plus/Minus Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 |||| ||||| || | || || | ||| ||||| ||||| | || ||||| || || Sbjct 19871 TGCATGCCCTCGTCGCGGCTGATCAGTTCATTGGAGAACGTCAAGCCAGGCATGAGACCT 19812 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199 | ||| || ||||| || || |||||||| || || || |||||||||||||| || || Sbjct 19811 CTCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATTCCTTCAACCGCA 19752 Query 42200 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAG 42254 |||||||||| |||| || | ||| | ||| || ||| ||||| | || Sbjct 19751 GCAAAGGCAACGAGTCGTTCGGC-GAACGCGGACT-TCTTGTCTGAGATCCAGCGTAAAG 19694 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| || |||||||| || | ||||| |||||||| ||||| | ||||||| | Sbjct 19693 CCCAGTCAGCCTTCTTCTTGATGCAAGGAATCGTTTCGATGGCGTCGAAGAGATGCTCCC 19634 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 || | ||||| | || |||||||| | || |||| | || || ||||||| Sbjct 19633 GTTGGGTCTGGTCTTTGATGTACGTATCGATGAGGAGGGAATACGTCTCGGAGTGAATGT 19574 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | || || || || || || ||||| || | |||||| | | || ||||| | Sbjct 19573 TCTCCATCATGATTTGGAAGCCATAGAAGCAGCGGGCCTCAGCTGCTTGGACTTCGTTGG 19514 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 | || |||||| | | ||| ||||| || || ||||| || || || || || | | Sbjct 19513 AGAACCGTTCAACGAGATTCTCGTTGACAATACCGTCCGAAGCCGCGAAGAAAGCAAGAA 19454 Query 42495 CATGTTTTATAAAA------TATTTTTCGT----CCGGTGTTAATTTATTCCAATCATTG 42544 |||| || ||| | || |||| ||||||| | ||| || | Sbjct 19453 CATGAGAGATGAAATGGCGCTCGTTGTCGTTCAACCGGTGT-------TGCCAGTCGTGC 19401 Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 |||||||| || | || | ||||| | ||||| ||||| ||||| || || || ||| Sbjct 19400 ATATCTTTCGACAGGTCCATCTCTTCCGCTGTCCAGAATGACGCTTCGGCTTTCTTGTAC 19341 Query 42605 ATATTCCAGAT 42615 || | |||||| Sbjct 19340 ATTTGCCAGAT 19330 >seq2980 Length=15283 Score = 123 bits (136), Expect = 3e-23 Identities = 367/562 (65%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| || ||||| |||| ||||| |||||||| || | || || || |||| Sbjct 11959 CAAACAAGCAAAATCAGTATGCAACCCCTCGTCTCTACTGATCAGCTCATTCGAGTACGT 12018 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||||| ||||| ||||| | |||||| | |||||| || | ||| || | |||||||| Sbjct 12019 CAGTCCTGGCATGAGGCCCCTCTTTTTCAACCAAAAAATCGCCGCGAAACAGCCAGAAAA 12078 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG----T 42236 ||| || |||||||| || |||||||| | || | ||| | ||| |||| | Sbjct 12079 GAATATGCCTTCTACCGCTGCAAAGGCGACGAGACGTTCTGC-GAACGTAGACTGTTGAT 12137 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | ||||||| ||||||| ||||||||||| | | ||| || || || || || | Sbjct 12138 CTGATATCCACCGAAGAGCCCACTCGGCCTTCTTCTGGATACAGGGAATAGTCTCGATAG 12197 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | | || | || | | | || |||| | || ||||| || | || | Sbjct 12198 CGTCGAATAAGTATTCTCGCTGCTTGACGTCTTGGATGTAGGTATCAATGAGGAGGGAGT 12257 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 || | |||||||| ||||| || || || || || |||||||| || | || || | Sbjct 12258 ACGTCTCTGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAGCAACGAGCTTCAG 12317 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 |||| || || | | |||||||| | | || ||||| || || || || | Sbjct 12318 CTGCCTGCACCTCGTTCGAGAATCGTTCGACGAGGTTCTCGTTGACGATCCCATCGGAGC 12377 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTA-ATTTAT 42533 | || || || || | ||| || || |||| ||||| || | | | | Sbjct 12378 CAGCGAAGAAGGCGAGTACGTGCGAGATGAAATGACGTTCGTTATCGTTCAGACGGGTGT 12437 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||| || | ||| | || | || | ||||| | ||||| ||||| || |||| Sbjct 12438 GCCAGTCTACCAGATCGTGCGAGAGGTCGATCTCTTCGGCTGTCCAGAATGAAGCCTCTG 12497 Query 42594 CCTTTTTATACATATTCCAGAT 42615 ||||||||||||| | ||| || Sbjct 12498 CCTTTTTATACATTTGCCAAAT 12519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671052379755240